Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq324 179 4e-40 seq1844 161 1e-34 seq797 89.7 6e-13 >seq324 Length=3932543 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | || |||||||| || || || ||||||||| | || Sbjct 118983 ATGCAGATCTTTGTCAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 119042 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | |||| | ||||| || || |||||||||||||| ||||| || |||||| Sbjct 119043 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 119102 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 119103 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 119162 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || ||||| || |||| || | ||||| Sbjct 119163 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 119209 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || |||||||| || ||||| || |||||| | | Sbjct 118526 AATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACTCTGGAAGTTGAGCCCAG 118585 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | |||| | |||||||| || |||||||||||||| ||||| || ||||| Sbjct 118586 TGACACCATCGAAAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCA 118645 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 118646 GCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 118705 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| || | || ||||||| | ||||| Sbjct 118706 CATCCAGAAGGAGTCTACTCTGCACTTGGTGCTGCGTCTGAGAGGTGG 118753 >seq1844 Length=2686333 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || || || || || || ||||||||| | || Sbjct 2460527 ATGCAGATCTTTGTGAAGACCCTGACTGGGAAAACCATCACCCTCGAGGTTGAGCCCAGT 2460586 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || |||||||| || || ||||| || |||||| Sbjct 2460587 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 2460646 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || || | || ||||| | ||||| || Sbjct 2460647 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 2460706 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || ||||| || |||| || | ||||| Sbjct 2460707 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 2460753 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || ||||| || || || || ||||||||| | || Sbjct 2460299 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAAACCATCACCCTCGAGGTTGAGCCCAGT 2460358 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || ||||||||||| || ||||| || || ||| Sbjct 2460359 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 2460418 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 2460419 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCCGACTACAAC 2460478 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || || ||||| || |||| || | ||||| Sbjct 2460479 ATCCAGAAAGAGTCAACCCTGCATCTCGTGCTGCGCCTGAGGGGTGG 2460525 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || || |||||||| || || |||||||||||| | | Sbjct 2459842 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATAACCCTTGAGGTTGAGCCCAG 2459901 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| || |||| || || || ||||||||||| || ||||| || ||||| Sbjct 2459902 TGACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCA 2459961 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || |||||||| ||||| || || || | || ||||| | ||||| || Sbjct 2459962 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAA 2460021 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| || || || || || ||||| || |||| || | ||||| Sbjct 2460022 CATCCCGAAAGAGTCAACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 2460069 Score = 141 bits (156), Expect = 1e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || || || || || || ||||||||| | | Sbjct 2460071 ATGCAGATCTTTGTGAAGACCCTGACTGGGAAAACCATCACCCTCGAGGTTGAGCCCAGC 2460130 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || |||| || || || ||||| || || || ||||| || |||||| Sbjct 2460131 GACACCATTGAGAACGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCCCCTGACCAG 2460190 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| | || |||| || ||||| | ||||| || Sbjct 2460191 CAGAGGCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGCACCCTGTCTGACTACAAC 2460250 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||||||||| || ||||| || |||| || Sbjct 2460251 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCT 2460288 >seq797 Length=179301 Score = 89.7 bits (98), Expect = 6e-13 Identities = 151/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 80575 GGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACAC--GACTCCA 80632 ||||| ||| | | || || || || |||| | |||||| |||||||| | || | Sbjct 72062 GGAGAGCCCTGGTAGGTTTCATAGGGCCCCTGCTCCTTGGCGAGCTCACAGCTGGCTTCC 72003 Query 80633 TAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGC-GCGCCTGTGGG 80691 | |||| ||| ||| ||| |||||||| || ||| | | || | ||||| ||| Sbjct 72002 AA--GGCCCCGTAATAGATGGTCTCAAAGATCTGCTGGTTGAG-CTGCTGTGCCTGGGGG 71946 Query 80692 TCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCG 80751 || || | | | ||||| ||||| |||| ||||||||||| |||||||| || Sbjct 71945 CTCTCAAAGGGATATCTCATCAGGATGAAGGCGTCTGCCAGGCCCTGCACGCCGATCCCG 71886 Query 80752 ATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCT 80785 || ||||| |||||| ||| || |||||||||| Sbjct 71885 ATGGGGCGATGGCGCCGGTTGGAGCGCTCGGCCT 71852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569920193624320