Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06]
54,736 sequences; 1,105,676,412 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq324 179 4e-40
seq1844 161 1e-34
seq797 89.7 6e-13
>seq324
Length=3932543
Score = 179 bits (198), Expect = 4e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| | || |||||||| || || || ||||||||| | ||
Sbjct 118983 ATGCAGATCTTTGTCAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 119042
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | |||| | ||||| || || |||||||||||||| ||||| || ||||||
Sbjct 119043 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 119102
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || |||||||| ||||| || || |||| || ||||| | ||||| ||
Sbjct 119103 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 119162
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||||||||| || ||||| || |||| || | |||||
Sbjct 119163 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 119209
Score = 168 bits (186), Expect = 8e-37
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| ||||| || ||||| || || |||||||| || ||||| || |||||| | |
Sbjct 118526 AATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACTCTGGAAGTTGAGCCCAG 118585
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | ||| | |||| | |||||||| || |||||||||||||| ||||| || |||||
Sbjct 118586 TGACACCATCGAAAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCA 118645
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | | || |||||||| ||||| || || |||| || ||||| | ||||| ||
Sbjct 118646 GCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 118705
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || ||||| || | || ||||||| | |||||
Sbjct 118706 CATCCAGAAGGAGTCTACTCTGCACTTGGTGCTGCGTCTGAGAGGTGG 118753
>seq1844
Length=2686333
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || || || || || || || ||||||||| | ||
Sbjct 2460527 ATGCAGATCTTTGTGAAGACCCTGACTGGGAAAACCATCACCCTCGAGGTTGAGCCCAGT 2460586
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| ||||||| || || |||||||| || || ||||| || ||||||
Sbjct 2460587 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 2460646
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || |||||||| ||||| || || || | || ||||| | ||||| ||
Sbjct 2460647 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 2460706
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||||||||| || ||||| || |||| || | |||||
Sbjct 2460707 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 2460753
Score = 158 bits (174), Expect = 1e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || ||||| || || || || ||||||||| | ||
Sbjct 2460299 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAAACCATCACCCTCGAGGTTGAGCCCAGT 2460358
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| ||||||| || || ||||||||||| || ||||| || || |||
Sbjct 2460359 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 2460418
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || |||||||| ||||| || || |||| || ||||| | ||||| ||
Sbjct 2460419 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCCGACTACAAC 2460478
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || || || || ||||| || |||| || | |||||
Sbjct 2460479 ATCCAGAAAGAGTCAACCCTGCATCTCGTGCTGCGCCTGAGGGGTGG 2460525
Score = 154 bits (170), Expect = 2e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| |||||||| ||||| || || |||||||| || || |||||||||||| | |
Sbjct 2459842 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATAACCCTTGAGGTTGAGCCCAG 2459901
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | ||||| || |||| || || || ||||||||||| || ||||| || |||||
Sbjct 2459902 TGACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCA 2459961
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | || || |||||||| ||||| || || || | || ||||| | ||||| ||
Sbjct 2459962 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAA 2460021
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||| || || || || || ||||| || |||| || | |||||
Sbjct 2460022 CATCCCGAAAGAGTCAACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 2460069
Score = 141 bits (156), Expect = 1e-28
Identities = 162/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || || || || || || || ||||||||| | |
Sbjct 2460071 ATGCAGATCTTTGTGAAGACCCTGACTGGGAAAACCATCACCCTCGAGGTTGAGCCCAGC 2460130
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || |||| || || || ||||| || || || ||||| || ||||||
Sbjct 2460131 GACACCATTGAGAACGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCCCCTGACCAG 2460190
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || |||||||| ||||| | || |||| || ||||| | ||||| ||
Sbjct 2460191 CAGAGGCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGCACCCTGTCTGACTACAAC 2460250
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
|||| ||||||||||| || ||||| || |||| ||
Sbjct 2460251 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCT 2460288
>seq797
Length=179301
Score = 89.7 bits (98), Expect = 6e-13
Identities = 151/214 (71%), Gaps = 6/214 (3%)
Strand=Plus/Minus
Query 80575 GGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACAC--GACTCCA 80632
||||| ||| | | || || || || |||| | |||||| |||||||| | || |
Sbjct 72062 GGAGAGCCCTGGTAGGTTTCATAGGGCCCCTGCTCCTTGGCGAGCTCACAGCTGGCTTCC 72003
Query 80633 TAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGC-GCGCCTGTGGG 80691
| |||| ||| ||| ||| |||||||| || ||| | | || | ||||| |||
Sbjct 72002 AA--GGCCCCGTAATAGATGGTCTCAAAGATCTGCTGGTTGAG-CTGCTGTGCCTGGGGG 71946
Query 80692 TCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCG 80751
|| || | | | ||||| ||||| |||| ||||||||||| |||||||| ||
Sbjct 71945 CTCTCAAAGGGATATCTCATCAGGATGAAGGCGTCTGCCAGGCCCTGCACGCCGATCCCG 71886
Query 80752 ATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCT 80785
|| ||||| |||||| ||| || ||||||||||
Sbjct 71885 ATGGGGCGATGGCGCCGGTTGGAGCGCTCGGCCT 71852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569920193624320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |