Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq618 206 4e-48 >seq618 Length=1768260 Score = 206 bits (228), Expect = 4e-48 Identities = 657/1006 (65%), Gaps = 42/1006 (4%) Strand=Plus/Minus Query 13607 AGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGTATCTCGT 13666 ||||||| ||||||||||| |||||| |||| | | | || ||| || Sbjct 1440536 AGACTACCTGAACATGACGAAGGACTGCAGCAACTTCAAGGAGACCCGGAGGTTCATCCA 1440477 Query 13667 GAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCA 13726 | || ||||||| |||||||| ||||| |||||||||||||| || || |||||| | Sbjct 1440476 GTTCCCACTGAGCCAGGAAGAGGCAGAGTTCCCCATCGCCTACTCCATGGTCATCCACAA 1440417 Query 13727 CAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTG 13786 |||||| |||||||||||||| |||||| || |||||||| |||| |||||| ||||||| Sbjct 1440416 CAAGATTGAGATGTTCGAGCGTCTCCTGCGGTCCATCTACACCCCACAGAACATCTACTG 1440357 Query 13787 CGTCCACGTGGACTCCAAG--TCCGGCGACGAGTTCATCCGG--GGC-GTCTCGGCCATC 13841 |||||| | ||| |||| |||| | || | ||| | ||| || |||||| Sbjct 1440356 TGTCCACATTGACAACAAGTCTCCGTCTAC-----CTTCCAGAAGGCTGTGAGGGCCATT 1440302 Query 13842 GCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCC 13901 | |||||||| || || ||||| ||| ||| | | ||||| || | |||| Sbjct 1440301 GTGGCCTGCTTCCCCAATGTTTTTGTGGCCAGCCGCCTGGAAAAAGTGGTCTATGCCTCC 1440242 Query 13902 TGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAG 13961 ||| || |||| || ||||||| ||||||| ||||||| ||| || | Sbjct 1440241 TGGTCCCGACTGCAAGCTGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCTGTGCCG 1440182 Query 13962 TGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATC 14021 ||| | ||| | |||||| || || | || ||||| |||||||||| || || Sbjct 1440181 TGGCGCTACATCCTCAACACCTGTGGCACTGATTTCCCCATCAAGACCAATGCTGATATT 1440122 Query 14022 GTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCATGCCCA 14079 || || || |||||| ||| ||| ||||| ||||| || || | | | || Sbjct 1440121 GTCCGTGCCCTGAAGCTCCTACAGGGCCAGAACAGTATGGAGTCAGAGAAGCC---CTCA 1440065 Query 14080 ACCA-CAAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTG--G 14136 ||| ||| | | | ||| ||||| ||| | || |||| | | Sbjct 1440064 GCCATCAAACAGGAGCGC---------TGGCAC-----TACCATC-ACGAAGTGGGGGAG 1440020 Query 14137 TCAA---CACCGGCAGGAACA-AGGCCCCGCCGCCGCTCAGGATC---CCCATCTTTGCG 14189 || | ||| | ||| ||| || | ||| || | | | | ||||| || | Sbjct 1440019 TCTATCTCACGGACAGCCACAGAGAAACTGCCACCACCCCACAACTCTCCCATGTTCACA 1439960 Query 14190 GGAAACGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCG 14249 || ||||| ||| | | |||| | |||| || ||| | | || | || || || Sbjct 1439959 GGCAACGCGTACATCGTGGTCTCACGGGCCTTTGTGCAGCACATCTTTGAGAACCCCACG 1439900 Query 14250 GTGGCCCTGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCC 14309 ||| | | || | | ||| | ||||||| |||||||||||||||||| | |||||| Sbjct 1439899 GTGCAGCAGTTCCTTGAGTGGGCCAAGGACACCTACAGCCCCGACGAGCACGTCTGGGCC 1439840 Query 14310 ACCGTGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACC 14369 ||| | | | ||| ||| ||| || | || ||| | | ||||| | | | Sbjct 1439839 ACCCTCAACCGCATGCCCGGTGTGCCAGGTGCCATGCCCCAGAATGACAAGTTCCATCTC 1439780 Query 14370 TCGGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAG 14429 ||||||||| ||| | | | | ||||||||||| ||| ||||| || | || Sbjct 1439779 TCGGACATGATTGCCTTGCCCCGTGTGGTCAAGTGGCAGTACATGGAGGGTGACACCAGC 1439720 Query 14430 AAAGGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGG 14489 ||||| || | |||||||| ||| |||| ||| | || ||||||||| |||| Sbjct 1439719 AAAGGTGCGCCCTACCCGCCCTGCACCGGCCAGCACCAGCGGGCGGTCTGCATCTACGGG 1439660 Query 14490 TCCGGCGACGTGAAGTGGCTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGA 14548 || || ||| |||||| ||| | | || || || ||||||||||| ||| Sbjct 1439659 GTGGGTGATGTGCCCTGGCTGCTCCAGCAGCAC-CAACTCTTGGCCAACAAGTTTGACCC 1439601 Query 14549 CGAGACGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 | | |||||| |||| | | ||||| || ||| || ||||| Sbjct 1439600 CTTGGTGGACGATGCCGCCATACAGTGTCTCGAGGAGCACCTGCGC 1439555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658288490639360