Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq324 111 1e-19 seq1844 105 6e-18 >seq324 Length=3932543 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || |||| |||||| | || || || || || || || Sbjct 118754 CATGCAGATCTTTGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 118813 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | |||||| || || || || ||||||||||| || || ||||| Sbjct 118814 TGACACCATCGAAAATGTCAAAGCCAAGATCCAGGATAAAGAAGGCATTCCCCCAGATCA 118873 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || ||||||| | ||| | || || ||||| Sbjct 118874 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 118933 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || | || ||||| ||||| || | |||||||| Sbjct 118934 CATCCAGAAGGAGTCTACTCTGCACTTGGTGCTGCGTCTGAGAGGTGGCAT 118984 >seq1844 Length=2686333 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| || || | || || || || || || || Sbjct 2460527 ATGCAGATCTTTGTGAAGACCCTGACTGGGAAAACCATCACCCTCGAGGTTGAGCCCAGT 2460586 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || |||||||||||||| || || || || Sbjct 2460587 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 2460646 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || |||||||| | ||| | ||||| |||||| Sbjct 2460647 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 2460706 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || ||||| || ||| | ||| | || |||| || |||||||| Sbjct 2460707 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGC 2460754 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| || || | || || || || || || || | Sbjct 2460071 ATGCAGATCTTTGTGAAGACCCTGACTGGGAAAACCATCACCCTCGAGGTTGAGCCCAGC 2460130 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| || || || || ||||||||||| || || || || Sbjct 2460131 GACACCATTGAGAACGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCCCCTGACCAG 2460190 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || |||||||| | ||| | || || |||||| Sbjct 2460191 CAGAGGCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGCACCCTGTCTGACTACAAC 2460250 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 || || ||||| || ||| | ||| | || |||| Sbjct 2460251 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCG 2460285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434620828830720