Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2435 114 1e-20 >seq2435 Length=9698745 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTG 34633 |||||||| | || || |||||| |||| ||||| ||||| || |||| || || Sbjct 8901668 CTGATGGCTTTGCCTCCATGCCACGCCCTTTGCCAGTTCTATGTTCTAGATGGTGAATTG 8901727 Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693 || ||||| |||||||| | || ||||| ||||| | || ||||| ||||||||||| Sbjct 8901728 TCTTGCCAACTCTATCAGAGGTCTGGAGATATGGGACTGGGAGTGCCTTTCAACATTGCC 8901787 Query 34694 AGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 || || | |||||||| |||||||| || |||||| Sbjct 8901788 AGCTATTCACTGCTCACATACATGATTGCCCATGTC 8901823 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || |||||||| |||||||| | || || ||||||||||| ||||| || | Sbjct 8901823 GACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATGTTGAAAGGCACTCCCAG 8901764 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||| ||||| || | |||||||| ||||| |||| || |||| || ||||| Sbjct 8901763 TCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATCTAGAACATAGAA 8901704 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAG 6771 ||||| |||| |||||| || || | |||||||| Sbjct 8901703 CTGGCAAAGGGCGTGGCATGGAGGCAAAGCCATCAG 8901668 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| || ||||| | ||| |||||||| ||||| || | || || || || || | Sbjct 8898728 CCAAAGAACTCTCTGCAAAGGGTGTGAAGATTTGGGATGCCAATGGATCACGTGAGTTCC 8898787 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||| |||| ||| ||| | | |||||||| ||||| || || || || || |||| Sbjct 8898788 TGGATAAGCAGGGTTTCAGCACCAGAGAGGAGGGGGACTTAGGACCAGTTTATGGTTTCC 8898847 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| |||||||| || || || Sbjct 8898848 AGTGGAGGCACTTTGGAGCAGAATA 8898872 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||| ||||||||||| || || || || || ||||| |||||||| Sbjct 8898872 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCTAAGTCCCCCTCCTCT 8898813 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| ||| |||| ||||| || || || || || | || ||||| |||||| Sbjct 8898812 CTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTGGCATCCCAAATCTTC 8898753 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || ||| | ||||| || |||| Sbjct 8898752 ACACCCTTTGCAGAGAGTTCTTTGG 8898728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447955698865920