Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1390 104 2e-17 seq2435 96.9 3e-15 >seq1390 Length=4484455 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||| |||||||||||||| |||||||| | || || || ||||||||| Sbjct 3696718 GTGGTGGAGGAGCTTTTCCGAGATGGGGTTAACTGGGGCAGGATCGTGGCCTTCTTTGAG 3696777 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 ||||| || || ||||| ||||| |||||||| | | || |||| || |||| | Sbjct 3696778 TTTGGCGGCGTGATGTGCGTGGAGAGCGTCAACCGGGAGATGTTTCCCCTTGTGGACAGC 3696837 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || || || |||||||| || Sbjct 3696838 ATCGCTGCCTGGATGACCGA 3696857 >seq2435 Length=9698745 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 |||||||| | || |||||||||||||| | || |||||||| | || ||||| Sbjct 8901831 AGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATGTTGAAAGGC 8901772 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || ||||| ||||| ||| | || ||||| || | ||||||||| | || || | | | Sbjct 8901771 ACTCCCAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATCTAGA 8901712 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | ||| |||||||||| | |||| Sbjct 8901711 ACATAGAACTGGCAAAGGGCGTGGCATGGAGGCAAAGCCAT 8901671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414200304599104