Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq2435 98.7 8e-16 seq1213 82.4 6e-11 >seq2435 Length=9698745 Score = 98.7 bits (108), Expect = 8e-16 Identities = 122/162 (75%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAA 30075 || |||||||||||||| || || || ||||| | ||| ||||| || || ||||| ||| Sbjct 8898860 AAGTGCCTCCACTGGAAACCATAAACTGGTCCTAAGTCCCCCTCCTCTCTGGTGCT-GAA 8898802 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || ||||| ||||| ||||| || ||||| | Sbjct 8898801 ACCCTGCTTATCCAGGAACTCACGTGATCCATTGGCATCCCAAATCTTCACACCCTTTGC 8898742 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 ||||| ||||||| ||||| || || || || || ||||| Sbjct 8898741 AGAGAGTTCTTTGGCATTTGTAGAGCC-CT-ACAAAACACAG 8898702 >seq1213 Length=7152351 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 114287 AGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATG 114346 ||||||||||| || |||| || | |||||| | | ||| | |||||| || || ||| Sbjct 6676340 AGCTCCCTGCTTAGCACTATATTAATTCTGTCTTTTAAAGGCCGATTCTTCTCAGGAATG 6676281 Query 114347 GAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 |||||||| || ||||| |||||||||| | ||||| || ||| Sbjct 6676280 GAGAACCAGGTTTTTCTGCCCATTATCAGTGCATTCTGTTTCCCT 6676236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405892250560096