Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq325 111 1e-19 seq3828 105 6e-18 >seq325 Length=5823465 Score = 111 bits (122), Expect = 1e-19 Identities = 108/138 (78%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 4562 ATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACC 4621 || || |||| | ||||| || || ||||| |||||||| || | ||| ||||| || || Sbjct 5212125 ATTCATACCT-CATCTCTACTGATGAGTTCATTAGAAAAAGTCAGTCCAGGCATCAATCC 5212183 Query 4622 TCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGC 4681 ||| || || |||||||| || | ||||| || ||||||||||| || ||||| || || Sbjct 5212184 TCTTTTCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGC 5212243 Query 4682 GGCAAACGCTACTAATCG 4699 ||||| ||||||| ||| Sbjct 5212244 TGCAAAAGCTACTACTCG 5212261 >seq3828 Length=4044606 Score = 105 bits (116), Expect = 6e-18 Identities = 102/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 4922 AAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 ||| |||||| || |||||||| |||||||| || ||||||||||||||||| |||| || Sbjct 1128593 AAAGCTTTCTCACCAAGTTTTCATTTACTATTCCATCACTGGCTGCAAAAAATGCCAGAA 1128652 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 | ||||| |||||||| | ||| || | || || || ||||| || || | || || | Sbjct 1128653 CGTGAGAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAATGAGGAAGGTCCTTTG 1128712 Query 5041 TTAAATCAAC 5050 |||||||| Sbjct 1128713 ACAAATCAAC 1128722 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || || || || | ||| ||||| | |||||||| || Sbjct 1121706 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 1121765 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 | |||||||||||| ||||| || || || ||||| |||||||| || || ||||| || Sbjct 1121766 AACCAAAATATAGCAGCAAAGGAACCTGAGAAGAAGATGCCTTCAACAGCAGCAAAGGCA 1121825 Query 4692 AC 4693 || Sbjct 1121826 AC 1121827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426764717347088