Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06]
54,736 sequences; 1,105,676,412 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq325 102 1e-16
seq797 95.1 2e-14
seq3828 89.7 7e-13
>seq325
Length=5823465
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
||||||||||| || | ||| |||||||| || || || ||||| | ||| | ||| ||
Sbjct 5212134 TCATCTCTACTGATGAGTTCATTAGAAAAAGTCAGTCCAGGCATCAATCCTCTTTTCTTC 5212193
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
|||||||| |||| || ||||| ||||||||||| || ||||| || || ||||| ||
Sbjct 5212194 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGC 5212252
Score = 96.9 bits (106), Expect = 5e-15
Identities = 82/100 (82%), Gaps = 1/100 (1%)
Strand=Plus/Plus
Query 47830 CTTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTT 47889
|||| ||||| |||||||| | ||||||||||| || | |||||| || ||||| ||||
Sbjct 5210874 CTTG-GACATGACTCCCATCCTCTGATATTCACCTACTCTTTTCTCAAAGAAATTGGTTT 5210932
Query 47890 TGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATT 47929
||||||||| || || |||||||| || ||||| |||||
Sbjct 5210933 TGCCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 5210972
Score = 86.0 bits (94), Expect = 9e-12
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460
|||||| | ||| || || || | |||||| |||||||| || || || ||||| || ||
Sbjct 5214170 ATCTTTGATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGC 5214229
Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520
||||| || || || ||||| | ||||||||||| ||||| || || |||||| ||
Sbjct 5214230 AATCTGGAAGCCATAGAAACAACGCGCTTCTGTGACTTGTACTTCTTGACTAAATCGCTC 5214289
>seq797
Length=179301
Score = 95.1 bits (104), Expect = 2e-14
Identities = 112/149 (75%), Gaps = 2/149 (1%)
Strand=Plus/Minus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
||||||||||| ||||||||||| ||||| || |||| || || || | || ||| ||
Sbjct 66446 ACTCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCCCTGGCTCTCTGC 66387
Query 78063 TCTTCATTTCCTGTATTCTT-TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGG 78121
|| || || || || ||||| |||||| || || ||||| | || || | ||||| ||
Sbjct 66386 TCCTCCTTCCCAGTGTTCTTCTTTAAG-TCAAGGAACTCAAAGATGTCCAAGTGCCAGGG 66328
Query 78122 TTCTAGATATATTGCCATAACTCCAGGTC 78150
|| ||||| || || | | |||||||||
Sbjct 66327 CTCCAGATAGATGGCAAAAGCTCCAGGTC 66299
Score = 93.3 bits (102), Expect = 6e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908
|||| || ||||| |||||||| || |||||| ||| | || || || || || || |
Sbjct 77319 TCCAGCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCAGCAATGTGGATGT 77260
Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968
| | ||||| || || ||||||||||||||||| || || ||||| || | |||||||
Sbjct 77259 TGAGGGACTGGCTCTGGTCGATGAAAGCTCCTCTGTCCGCTGCCATCTTCAGGATGGTCT 77200
Query 76969 TTTGAGGAATTTCCCA 76984
| || | || |||||
Sbjct 77199 TCTGGGAGATCTCCCA 77184
>seq3828
Length=4044606
Score = 89.7 bits (98), Expect = 7e-13
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTG 48698
|| ||||||||||||||||| || |||| |||| ||||||||| |||||||| || |
Sbjct 1130328 ACCTCTTCAGCTGTCCAAAAGGAGGCCTGAGCTTGTTTATACATTTTCCATATGTCTGGG 1130387
Query 48699 TATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTGCAAGGATAGGTTCC 48752
|| ||||| ||||| || ||||| | ||||||||| || | |||||||
Sbjct 1130388 TACTGGATGGGGAAGATGACAAACCGGCGGGGATTTTTTCTGAGAAGAGGTTCC 1130441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694193507607040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |