Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq325 102 1e-16 seq797 95.1 2e-14 seq3828 89.7 7e-13 >seq325 Length=5823465 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | ||| |||||||| || || || ||||| | ||| | ||| || Sbjct 5212134 TCATCTCTACTGATGAGTTCATTAGAAAAAGTCAGTCCAGGCATCAATCCTCTTTTCTTC 5212193 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| |||| || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 5212194 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGC 5212252 Score = 96.9 bits (106), Expect = 5e-15 Identities = 82/100 (82%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 47830 CTTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTT 47889 |||| ||||| |||||||| | ||||||||||| || | |||||| || ||||| |||| Sbjct 5210874 CTTG-GACATGACTCCCATCCTCTGATATTCACCTACTCTTTTCTCAAAGAAATTGGTTT 5210932 Query 47890 TGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 ||||||||| || || |||||||| || ||||| ||||| Sbjct 5210933 TGCCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 5210972 Score = 86.0 bits (94), Expect = 9e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||| | ||| || || || | |||||| |||||||| || || || ||||| || || Sbjct 5214170 ATCTTTGATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGC 5214229 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520 ||||| || || || ||||| | ||||||||||| ||||| || || |||||| || Sbjct 5214230 AATCTGGAAGCCATAGAAACAACGCGCTTCTGTGACTTGTACTTCTTGACTAAATCGCTC 5214289 >seq797 Length=179301 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| ||||||||||| ||||| || |||| || || || | || ||| || Sbjct 66446 ACTCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCCCTGGCTCTCTGC 66387 Query 78063 TCTTCATTTCCTGTATTCTT-TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGG 78121 || || || || || ||||| |||||| || || ||||| | || || | ||||| || Sbjct 66386 TCCTCCTTCCCAGTGTTCTTCTTTAAG-TCAAGGAACTCAAAGATGTCCAAGTGCCAGGG 66328 Query 78122 TTCTAGATATATTGCCATAACTCCAGGTC 78150 || ||||| || || | | ||||||||| Sbjct 66327 CTCCAGATAGATGGCAAAAGCTCCAGGTC 66299 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||| |||||||| || |||||| ||| | || || || || || || | Sbjct 77319 TCCAGCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCAGCAATGTGGATGT 77260 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| || || ||||||||||||||||| || || ||||| || | ||||||| Sbjct 77259 TGAGGGACTGGCTCTGGTCGATGAAAGCTCCTCTGTCCGCTGCCATCTTCAGGATGGTCT 77200 Query 76969 TTTGAGGAATTTCCCA 76984 | || | || ||||| Sbjct 77199 TCTGGGAGATCTCCCA 77184 >seq3828 Length=4044606 Score = 89.7 bits (98), Expect = 7e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTG 48698 || ||||||||||||||||| || |||| |||| ||||||||| |||||||| || | Sbjct 1130328 ACCTCTTCAGCTGTCCAAAAGGAGGCCTGAGCTTGTTTATACATTTTCCATATGTCTGGG 1130387 Query 48699 TATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTGCAAGGATAGGTTCC 48752 || ||||| ||||| || ||||| | ||||||||| || | ||||||| Sbjct 1130388 TACTGGATGGGGAAGATGACAAACCGGCGGGGATTTTTTCTGAGAAGAGGTTCC 1130441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694193507607040