Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3828 102 1e-16 seq325 98.7 1e-15 seq797 93.3 6e-14 >seq3828 Length=4044606 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || || || || || |||||||| || || | ||| || Sbjct 1121706 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 1121765 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | |||||||||||| || || || || || ||||| |||||||| ||||| || || || Sbjct 1121766 AACCAAAATATAGCAGCAAAGGAACCTGAGAAGAAGATGCCTTCAACAGCAGCAAAGGCA 1121825 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 1121826 ACCACTCTCTCACC 1121839 >seq325 Length=5823465 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | ||| |||||||| || || |||||||| | ||| | || || Sbjct 5212134 TCATCTCTACTGATGAGTTCATTAGAAAAAGTCAGTCCAGGCATCAATCCTCTTTTCTTC 5212193 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| || | || ||||| ||||||||||| || ||||| || || || || || Sbjct 5212194 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 5212253 Query 46774 ACAAGTCTCTCTCC 46787 || | || ||||| Sbjct 5212254 ACTACTCGTTCTCC 5212267 Score = 96.9 bits (106), Expect = 5e-15 Identities = 82/100 (82%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 46319 CTTGTGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTT 46378 |||| ||||| |||||||| | || ||||||||||| | |||||| || ||||| |||| Sbjct 5210874 CTTG-GACATGACTCCCATCCTCTGATATTCACCTACTCTTTTCTCAAAGAAATTGGTTT 5210932 Query 46379 TGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||||||||| || || |||||||| || ||||| ||||| Sbjct 5210933 TGCCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 5210972 Score = 86.0 bits (94), Expect = 9e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||| | || || || || | |||||| |||||||||||||| |||||||| || || Sbjct 5214170 ATCTTTGATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGC 5214229 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 ||||| || || || ||||| | ||||| || | ||||| ||| || |||||| || Sbjct 5214230 AATCTGGAAGCCATAGAAACAACGCGCTTCTGTGACTTGTACTTCTTGACTAAATCGCTC 5214289 >seq797 Length=179301 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| |||||||| || |||||| ||| | || || || || || || | Sbjct 77319 TCCAGCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCAGCAATGTGGATGT 77260 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| || || ||||||||||||||||| || || ||||| || | ||||||| Sbjct 77259 TGAGGGACTGGCTCTGGTCGATGAAAGCTCCTCTGTCCGCTGCCATCTTCAGGATGGTCT 77200 Query 75564 TTTGAGGAATTTCCCA 75579 | || | || ||||| Sbjct 77199 TCTGGGAGATCTCCCA 77184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712446610283520