Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1844 123 6e-23 seq324 118 2e-21 >seq1844 Length=2686333 Score = 123 bits (136), Expect = 6e-23 Identities = 159/218 (73%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || |||||||| |||||||||| |||| | || | ||| ||| Sbjct 2460054 AGCACAAGATGGAGGGTTGACTCTTTCGGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCT 2459995 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || |||||||| || Sbjct 2459994 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 2459935 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||| || |||| | | |||| ||| ||| || ||||| || || Sbjct 2459934 TGGATCTTGGCTTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTTATG 2459878 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || |||||||| |||| ||||||||| Sbjct 2459877 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 2459840 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| || || |||||||| ||||||||||| |||| | || | ||||||| Sbjct 2460510 AGCACGAGATGCAGGGTTGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCT 2460451 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | || |||||||| || Sbjct 2460450 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 2460391 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| || || || || || Sbjct 2460390 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATG 2460334 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || || |||||||| |||| |||||| Sbjct 2460333 GTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460299 Score = 105 bits (116), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || || ||||||||||| |||| | || | ||| ||| Sbjct 2460738 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCT 2460679 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || ||||| || || Sbjct 2460678 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 2460619 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| || || || || || Sbjct 2460618 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATG 2460562 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || |||||||| |||| |||||| Sbjct 2460561 GTTTTCCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460527 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || || ||||||||||| || | | || | ||||||| Sbjct 2460282 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2460223 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || ||||| |||||||||||||| | | || ||||| || || Sbjct 2460222 TCCAACTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCC 2460163 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||| || |||| | | |||| ||| || || || || || ||| Sbjct 2460162 TGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTT 2460103 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| |||| |||||| Sbjct 2460102 TTCCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460071 >seq324 Length=3932543 Score = 118 bits (130), Expect = 2e-21 Identities = 156/214 (73%), Gaps = 7/214 (3%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||||||||| || ||||||||||| || | | || | |||||||| | Sbjct 118733 CAAG-TGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCA 118675 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| | |||||||||||| | | || || ||||| || || | Sbjct 118674 GCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGA 118615 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || |||||| | || | | |||| ||| ||| ||||| ||||| || || | Sbjct 118614 TCTTAGCCTTGACATTTTCGATGGTGTC---ACTGGGCTCAACTTCCAGAGTGATGGTCT 118558 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||| || || ||||||||||||| ||||||||| Sbjct 118557 TGCCTGTCAGGGTCTTCACGAAGATCTGCATTTT 118524 Score = 104 bits (114), Expect = 5e-17 Identities = 151/211 (72%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||||||||| || ||||||||||| || | | || | ||||||||| | Sbjct 118961 CAAG-TGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCA 118903 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| ||||||||||| || | | || ||||| || || || | Sbjct 118902 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCTTTATCCTGGA 118843 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || ||||||| | || | | |||| ||| ||| || || || || || || | Sbjct 118842 TCTTGGCTTTGACATTTTCGATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATGGTCT 118786 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || | |||||||| |||| |||||| Sbjct 118785 TGCCTGTCAAGGTCTTCACAAAGATCTGCAT 118755 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || || ||||||||||| || | | || | ||||||| Sbjct 119194 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 119135 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || || ||||| || Sbjct 119134 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 119075 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| | || | | |||| ||| ||| || || || || || Sbjct 119074 TGGATCTTGGCCTTGACATTTTCGATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATG 119018 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | ||||| || |||| |||||| Sbjct 119017 GTCTTGCCTGTCAAGGTCTTGACAAAGATCTGCAT 118983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153011619703856