Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq3929 170 3e-37 seq1197 98.7 1e-15 >seq3929 Length=4502058 Score = 170 bits (188), Expect = 3e-37 Identities = 183/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||||||| || |||||||| ||||| ||| ||| |||||||| || |||||||| Sbjct 980009 ATGAGTCGAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 979950 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||||||| ||||| || || || |||||||| | || || Sbjct 979949 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 979890 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || || |||| | ||| || ||| ||||| | ||||| Sbjct 979889 ACCAACCCAAACACCTCCTGCCCAACAGAAAACTGCAGGTGTTCAGGCACATGAGGAGGG 979830 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | || ||||||||||| || ||||||||| Sbjct 979829 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 979770 Query 9484 TG 9485 || Sbjct 979769 TG 979768 Score = 141 bits (156), Expect = 1e-28 Identities = 210/298 (70%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || || ||| | |||| || ||| | | || Sbjct 981976 GGAAGGCAGTGAAAGGACAGCCTTTAACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 981917 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| ||| | || ||||| | ||| || || |||||||||||||||||| | || | Sbjct 981916 TGTTGATTATCTCAAAGCCCACTTTTCCACCAAAAGTGCTGGGCTTCCAGTACTCAGGTG 981857 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || |||| || ||||| || |||||||| || || | ||| | || Sbjct 981856 AGCAGATTGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 981797 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || |||||||| || || |||||||| || | || || | |||||||||| Sbjct 981796 TTTCTCCAAAGATGGCACCTGGTCGTGGCTTTTCTACGAGGAGGCCTGGATACAGCTCCA 981737 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 ||| || | |||||| ||||| | ||||| || || || || ||||||||||| Sbjct 981736 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGT 981679 >seq1197 Length=5421966 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||| || ||| |||| || | |||| || ||||| ||||| ||||| ||| | |||| Sbjct 4397953 TCTTAACTATCTCGAAGCCAGCTGCTCCACCAAAGGTACTGGGTTTCCAATACTCTGGGG 4398012 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| ||| | | || || |||||||| || ||||| || | ||| | |||| Sbjct 4398013 AGCAGATAGGGTTTCCAAAAAGCCCCTTGAGGGAAAATGGAGCTCCAATCTCCACCATGC 4398072 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || || || | ||||| |||| || || | || || || | ||| | ||||| Sbjct 4398073 TTTCTCCAAAAATACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCTGGGTAAAACTCCA 4398132 Query 8529 CAGCCTCGACGTCTCCGTAAAG 8550 ||| || | |||||| || || Sbjct 4398133 GAGCATCAATGTCTCCATACAG 4398154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716386312893440