Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06] 54,736 sequences; 1,105,676,412 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1844 141 2e-28 seq324 122 2e-22 seq3230 84.2 5e-11 >seq1844 Length=2686333 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || ||||| |||||||||||||| | ||| || | Sbjct 2460074 CAGATCTTTGTGAAGACCCTGACTGGGAAAACCATCACCCTCGAGGTTG--AGCCCAGCG 2460131 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| ||| ||||| ||||| |||||||| || || || ||||||| Sbjct 2460132 ACACCATTGAGAACGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCCCCTGACCAGC 2460191 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||| | |||||||| | || || | || || ||| Sbjct 2460192 AGAGGCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGCACCCTGTCTGACTACAACA 2460251 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || ||||| || || |||||||| || | || ||| Sbjct 2460252 TCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGA 2460292 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || ||||| |||||||||||||| | ||| || | Sbjct 2460302 CAGATCTTTGTGAAGACCCTGACTGGCAAAACCATCACCCTCGAGGTTG--AGCCCAGTG 2460359 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| |||||||| ||||| || || || || |||| Sbjct 2460360 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGC 2460419 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 2460420 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCCGACTACAACA 2460479 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| ||||| |||||||| || Sbjct 2460480 TCCAGAAAGAGTCAACCCTGCATCTCGT 2460507 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || ||||| |||||||||||||| | ||| || | Sbjct 2460530 CAGATCTTTGTGAAGACCCTGACTGGGAAAACCATCACCCTCGAGGTTG--AGCCCAGTG 2460587 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| |||||||||||||| || || || ||||||| Sbjct 2460588 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGC 2460647 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||| || | || || |||| || ||| Sbjct 2460648 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAACA 2460707 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || |||||||| Sbjct 2460708 TCCAGAAGGAATCCACCCTCCATCTTGT 2460735 >seq324 Length=3932543 Score = 122 bits (134), Expect = 2e-22 Identities = 153/207 (74%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | ||||| || || |||||||| ||||| || || ||| Sbjct 118758 CAGATCTTTGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGTG 118815 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| || |||||| ||||| ||||| |||||||| || || || || |||| Sbjct 118816 ACACCATCGAAAATGTCAAAGCCAAGATCCAGGATAAAGAAGGCATTCCCCCAGATCAGC 118875 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 118876 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 118935 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || ||||| |||| Sbjct 118936 TCCAGAAGGAGTCTACTCTGCA-CTTG 118961 Score = 122 bits (134), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || | ||||| || || |||||||| ||||| || || ||| Sbjct 118986 CAGATCTTTGTCAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGTG 119043 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| || ||||| ||||| |||||||| || || || || || ||||||| Sbjct 119044 ACACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGC 119103 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 119104 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 119163 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || |||||||| Sbjct 119164 TCCAGAAGGAATCCACCCTCCATCTTGT 119191 Score = 118 bits (130), Expect = 3e-21 Identities = 158/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || |||||||| || || ||||| || || ||||| || || || || Sbjct 118524 AAAATGC---AGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACTCTGGAAGTTGA- 118579 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| |||||||||| || ||||| ||||| |||||||| || || || || | Sbjct 118580 -GCCCAGTGACACCATCGAAAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCC 118638 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | |||||||| | | ||||| || || || ||||| ||||||||| | || || | | Sbjct 118639 CCGACCAGCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTG 118698 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 | || ||| |||| || || || || ||||| |||| Sbjct 118699 ACTACAACATCCAGAAGGAGTCTACTCTGCA-CTTG 118733 >seq3230 Length=1922383 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || |||||||| |||||| | ||||||||| | || Sbjct 1125503 CAGATCTTCGTGAAGACGCTGACGGGAAAAACCATCACCTTGGAGGTGGAACCCAACGAT 1125444 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||| || ||| ||||| ||||| |||||||| Sbjct 1125443 ACCATCGAGAATGTGAAAGCCAAGATCCAGGATAAAGAAGG 1125403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202887017290784