Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calypte_20anna_20[refseq_20GCF_5F000699085.1_202014-06-06]
54,736 sequences; 1,105,676,412 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq1844 141 9e-29
seq324 127 2e-24
>seq1844
Length=2686333
Score = 141 bits (156), Expect = 9e-29
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
|| ||| || | || || | ||| ||||| || ||| |||||||| ||||| |||||
Sbjct 2460757 ACAGCCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 2460698
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
||||||||||||| |||| || ||||||||||| || || ||||| | ||| ||||| |
Sbjct 2460697 GGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG 2460638
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811
||||| || || |||||| ||| || ||||| | | ||||| || | |||
Sbjct 2460637 GGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 2460578
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| | || || ||||| || ||||| ||||| || || ||||||||
Sbjct 2460577 AACCTCGAGGGTGATGGTTTTCCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460527
Score = 136 bits (150), Expect = 4e-27
Identities = 165/222 (74%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || | ||| ||||| || || ||| ||| | ||||| ||||||||||||||||||
Sbjct 2460060 AGGCGCAGCACAAGATGGAGGGTTGACTCTTTCGGGATGTTGTAGTCGGAGAGGGTGCGC 2460001
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
|||| || ||||||||||| || || ||||| | ||| ||||| | ||||| || |||
Sbjct 2460000 CCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCC 2459941
Query 41765 TTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|||||| || | || |||| ||| | | ||||| || | ||| ||||| | ||
Sbjct 2459940 TTGTCC-TGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGT 2459882
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||| || || || ||||| ||||| || || |||||||| ||
Sbjct 2459881 TATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 2459840
Score = 136 bits (150), Expect = 4e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || | ||| |||||||| || ||| ||||| ||||| ||||||||||||||||||
Sbjct 2460516 AGGCGCAGCACGAGATGCAGGGTTGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGC 2460457
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| || || ||||| | ||| || || | ||||| || |||
Sbjct 2460456 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 2460397
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|||||| ||| || ||||| | | ||||| || | ||| ||||| | ||
Sbjct 2460396 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTG 2460337
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| ||||| || ||||| ||||| || || ||||||||
Sbjct 2460336 ATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2460299
>seq324
Length=3932543
Score = 127 bits (140), Expect = 2e-24
Identities = 163/223 (73%), Gaps = 4/223 (2%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| ||||| || ||||||||| ||||| ||||| || ||||||||
Sbjct 118744 AGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGT 118685
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| || || |||| | ||| ||||| | ||||| || ||||
Sbjct 118684 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCGGGGGGAATGCCCTCC 118625
Query 41765 TTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCG 41822
|||||| ||| || ||| || || | ||||| || | ||| || |||| |
Sbjct 118624 TTGTCCTGGATCTTAGCCTTGACATTTTCG--ATGGTGTCACTGGGCTCAACTTCCAGAG 118567
Query 41823 TTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
| || || || || ||||| ||||| ||||| |||||||| ||
Sbjct 118566 TGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATTTT 118524
Score = 127 bits (140), Expect = 2e-24
Identities = 162/221 (73%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || | ||| ||||| || ||| |||||||| ||||| ||||| || |||||||||
Sbjct 119200 AGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 119141
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| || || ||||| | ||| ||||| | ||||| || ||||
Sbjct 119140 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCC 119081
Query 41765 TTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCG 41822
|||||| ||| || ||| || || | ||||| || | ||| ||||||| |
Sbjct 119080 TTGTCCTGGATCTTGGCCTTGACATTTTCG--ATGGTGTCACTGGGCTCAACCTCCAGGG 119023
Query 41823 TTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
| || || || || |||| ||||| || || |||||||||
Sbjct 119022 TGATGGTCTTGCCTGTCAAGGTCTTGACAAAGATCTGCATG 118982
Score = 114 bits (126), Expect = 1e-20
Identities = 159/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| ||||| || ||||||||| ||||| ||||| || |||||||||
Sbjct 118972 AGACGCAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 118913
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| || || ||||| | ||| || || | ||||| || ||
Sbjct 118912 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCT 118853
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|| ||| || | || |||| || | | ||||| || | ||| ||||||| ||
Sbjct 118852 TTATCC-TGGATCTTGGCTTTGACATTTTCGATGGTGTCACTGGGCTCAACCTCCAGGGT 118794
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|| || || || |||| ||||| || || |||||||||
Sbjct 118793 GATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCATG 118754
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461987691603200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |