Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq7229 105 8e-18 seq15305 96.9 4e-15 >seq7229 Length=62315 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 2448 CCTCATCTCTGCTGATGAGTTCATTAGAAAATGTGAGTCCAGGCATTAATCCTCTTTTCT 2389 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 2388 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 2329 Query 24277 C 24277 | Sbjct 2328 C 2328 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 24387 TCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 24446 || ||| |||||||| || || ||||| | |||||| |||||||| ||||| || ||| Sbjct 840 TCTTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTT 781 Query 24447 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAA 24506 || ||||| || || || || |||||||| | ||| || || |||||||||||| || | Sbjct 780 TCCATGGCGATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATCTGTACTTCTTGACTA 721 Query 24507 AATCGTTC 24514 || || || Sbjct 720 AACCGCTC 713 >seq15305 Length=33806 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || || || ||||| || || |||||| || | || ||||| || ||||| | Sbjct 16702 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 16643 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | || || || |||||||||||||||||||||||||| ||||| || | || || | Sbjct 16642 TGAGGGACTGGCTCTGATCGATGAAGGCTCCCCTGTCTGCTGCCATCTTGAGGACAGTTT 16583 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | || ||||| | || ||||| | | |||| | || || |||| Sbjct 16582 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 16532 Score = 93.3 bits (102), Expect = 5e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||| ||||||||||| || | ||||| || ||||| || |||||||| || || || | Sbjct 14297 TACCTGAAATTCTCCCGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCAAT 14238 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 || || ||||| |||||||| |||||||| || ||||| ||||| || | | | | Sbjct 14237 GGATTCGTTATTGCCCAAAATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAAGGAGAAG 14178 Query 53269 ACTATTTCTAAGACCGTAT 53287 || ||||| | ||||||| Sbjct 14177 GCTGTTTCTCACACCGTAT 14159 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 ||||| ||||| ||||||||||||||||| || || | ||| || ||||||| || || Sbjct 8817 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAAAAAAGGTCTCTGGCTCGCTGC 8758 Query 54089 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 || || || || || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 8757 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 8699 Query 54148 TTCCAAGTATATGG 54161 |||| ||| |||| Sbjct 8698 CTCCAGGTAGATGG 8685 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| || ||||||||||||||||| || || || || || || || || | Sbjct 2725 CACTGAATACTTTCTTAGTTTCTTTGTGTAGATTGGACACTGCAATCCTTGCTGCCAGGA 2666 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | || || || || |||| || || || || || |||| || | |||||| |||| Sbjct 2665 TAGCGTAGTCAGGGTGTTTGGTGGTCAGGGTTGCAGCCGTTTCAGCAGCCAGAGTATCCA 2606 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | || | || || || || ||||| Sbjct 2605 GTTCCACTGTCGTGACACCACTGTACAGGCCCTGAATCACTTTCAT 2560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593324741639520