Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq10859 150 2e-31 seq17223 93.3 4e-14 >seq10859 Length=4031 Score = 150 bits (166), Expect = 2e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || || || || || ||||| ||||||||| |||| || || || Sbjct 229 AAAATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGCCC 288 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| | |||| || || | ||||| || ||||| ||| | || Sbjct 289 AGTGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGA 347 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| | || |||| || ||||| |||||||| || | ||||||||| |||||| Sbjct 348 TCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTA 407 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| |||| ||||||| ||| ||||| |||| || ||| Sbjct 408 CAACATCCAGAAGGAATCCACCTTGCATCTTGTGCTGCGCCTGAGAGGTGGC 459 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 460 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAGGTTGAGCCCAGT 519 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || ||||| ||| | || ||| Sbjct 520 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 579 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | ||||||| | |||||||||| Sbjct 580 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCACCTTGTCCGACTACAAC 639 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| | || |||||||| ||| ||||| |||| || ||| Sbjct 640 ATCCAGAAAGAGTCTACTCTGCATCTTGTGCTGCGCCTGAGAGGTGGC 687 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 688 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAGGTTGAGCCCAGT 747 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || | || || | ||||| || ||||| ||| | || || Sbjct 748 GACACCATTGAGAACG-TGAAAGCTAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 806 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 807 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 866 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| ||||||| ||| |||| ||||||| || Sbjct 867 CATCCAGAAGGAATCCACCTTGCATCTTGTGCTGCGTCTGAGGGGTGG 914 >seq17223 Length=94229 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| |||| ||||| || || || || ||| ||||||||||||| || || Sbjct 10933 GGTGAGCGAGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 10992 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 || || |||||||| ||||| | ||||| ||||| || ||||||||| ||| || ||| Sbjct 10993 GCTATTTTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTC 11052 Query 117152 ATCTCCAGGGACGAGG 117167 || ||| || |||| Sbjct 11053 ATTAGCAGAGATGAGG 11068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514874814606240