Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq17178 102 2e-16 >seq17178 Length=43493 Score = 102 bits (112), Expect = 2e-16 Identities = 104/133 (78%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||| ||||||||| | ||| | ||||| ||||| |||||||||| |||||||| Sbjct 14340 GCTTTTTTCGGAGCTCAGATGAATGCATTTATTCATGTCATTATGTACATGTATTATGGA 14281 Query 52117 ATGGCCGCTTGTGGTCCTATGTT-CAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || ||||| |||| || |||||| || || ||||||||||| || | || || Sbjct 14280 TTAGCTGCCTGTGGCCCTAAATTTCAGAAA-TACCTGTGGTGGAAACGATACTTGACCAT 14222 Query 52176 AATGCAGTTGGTA 52188 | |||| |||||| Sbjct 14221 ATTGCAATTGGTA 14209 Score = 100 bits (110), Expect = 5e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 13705 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 13646 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 || |||||||| || ||| || ||| ||||| || | | ||||| || |||||||| Sbjct 13645 CCCTAAATGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTCATTTTCCTGTTTGG 13586 Query 52305 TAACTTCTATTTTAGAACATACAAG 52329 ||||||||| | | | ||||| ||| Sbjct 13585 TAACTTCTACTATCGGACATATAAG 13561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922579712178960