Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq17223 102 8e-17 seq7229 89.7 5e-13 >seq17223 Length=94229 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || || || || || || ||||| || || | || || Sbjct 11066 TCATCTCTGCTAATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 11007 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||| ||||| ||||| ||||| |||||||| || ||||||||||| ||||| ||| Sbjct 11006 AGCCAAAAAATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 10947 Query 16379 ACCAATCGCTCACC 16392 |||| ||||||||| Sbjct 10946 ACCACTCGCTCACC 10933 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 ||||||| ||| |||| || || || || || | | || |||||| | | || Sbjct 16289 AAAAATCTGCATCCAGAGTGAAGACGTTGTCCATTGTTTCTGCCATAACAGCAAAACGTT 16230 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 |||| || ||| | ||| |||||||| |||||||||||||| | |||||||| |||| Sbjct 16229 GATACTCTGAAACCCGCTTCTCAAAGAAGTTTGTTTTTCCTTCCAGAGAAATATTCTCCA 16170 Query 16008 TAAAATCAAAAGGATTTT 16025 | |||||||||||||||| Sbjct 16169 TGAAATCAAAAGGATTTT 16152 >seq7229 Length=62315 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||||| ||||| ||| || Sbjct 2446 TCATCTCTGCTGATGAGTTCATTAGAAAATGTGAGTCCAGGCATTAATCCTCTTTTCTTC 2387 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||| || | ||||| || ||||||||||| || ||||| ||||| ||||| || Sbjct 2386 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 2327 Query 16379 AC 16380 || Sbjct 2326 AC 2325 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 16490 TCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTC 16549 ||||| |||| ||| || || || || || | ||| |||||||||||||| ||||| Sbjct 840 TCTTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTT 781 Query 16550 TCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 ||||| || ||||| || ||||| || || | |||||| | || |||||||| Sbjct 780 TCCATGGCGATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATCTGTACTTC 728 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985 || ||||| ||| ||| | |||||||||| |||| ||| ||||||||||| || || Sbjct 3741 TTCGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTG 3682 Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 ||||| | || || |||||||| || ||||||||||| Sbjct 3681 CCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 3644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462202845416400