Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq45461 343 1e-89 seq2783 89.7 4e-13 >seq45461 Length=939 Score = 343 bits (380), Expect = 1e-89 Identities = 642/930 (69%), Gaps = 16/930 (2%) Strand=Plus/Minus Query 107523 ATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGAC 107582 |||||||| || ||| || || ||||| || |||| | |||||| || | Sbjct 922 ATCAACTGCTCGGGGGTCGTTCGCGGGGATGAGAAAGCCATCCAGGAGGCCCGGCTCAGC 863 Query 107583 AACCTGGAAGTGAAGAA-AAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAAC 107641 |||||||| || ||| ||| ||| || || || | | | ||||| ||| | || Sbjct 862 AACCTGGAGGTTGCGAACAAAAGGGTTTCC-CTGACGCTCGACGAGTACCTGAACGTGAC 804 Query 107642 CAGAGACTGTGAGC-GCTTCAAGG---CCCAAAGGAAGTTCATACAGTTCCCACTGAGTA 107697 | ||||| ||| ||||||||| ||| || ||||| ||||||| ||||| Sbjct 803 GAAGGACTGC-AGCAGCTTCAAGGAGACCC---GGCGCTTCATTGAGTTCCCGCTGAGCG 748 Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACT 107757 | || ||| ||| |||||||| |||||||| ||||| |||| | || || || | | Sbjct 747 AGGAGGAGGCAGAGTTCCCCATCGCCTACTCCATGGTCATCCACAACAAAATCGAGATGT 688 Query 107758 TTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATG 107817 |||| || || ||||| || | |||||||| |||||| | |||||||||||| | ||| Sbjct 687 TTGAGCGACTCCTGCGGTCCCTCTATGCCCCCCAGAACGTCTACTGTGTCCACATTGATA 628 Query 107818 TGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATG 107877 |||||||||| | ||| | ||||| || |||||| | ||||||||||||| | Sbjct 627 GCAAGTCCCCAGCCGCCTTCCAGGAGGCTGTGCGGGCCATCGTAGCCTGCTTCCCCAACG 568 Query 107878 TCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTG 107937 |||| |||| || ||| |||||| ||||||||||||||| | |||| |||| Sbjct 567 TCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGTCCCGGCTGCAGGCTG 508 Query 107938 ACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATA 107997 |||| ||||| ||| | ||| || | |||||| | |||||||| | ||| | || || | Sbjct 507 ACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCCATGCCATGGCACTACATCCTTAACA 448 Query 107998 CATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGT 108057 | || || || ||||||||||| |||||||| |||||||| |||| ||||| ||| | Sbjct 447 CCTGTGGCACCGACTTCCCCATCAAGACCAACGCCGAGATCGTCCGTGCCCTGAAGGGGC 388 Query 108058 TGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGA 108117 || |||| |||||| |||||||| ||| || || | | || | | |||||| Sbjct 387 TGCAGGGGCGGAACAGCATGGAGTCAGAGAAGCCCTCGGCCTTGAAGCAGGACCGCTGGC 328 Query 108118 AATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCA-AGATGAAGGACCCTCCC 108176 |||| | | || ||| || | | | || || | || ||| ||| || || Sbjct 327 GCTACCACCACGAAGTGGGGAACTCCATCTCCCGGACAACCACAGA-GAAACTGCCACCA 269 Query 108177 CCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTC 108236 || | || | |||||||||||||| || || || | |||| | | || ||||| || Sbjct 268 CCCCACAACTCTCCCATGTTCACAGGCAACGCTTACATCGTGGTCACGCGGGCCTTCGTG 209 Query 108237 CAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTAT 108296 || || |||| || ||||| | || | | | || |||| ||| |||||||| Sbjct 208 CAGCACATCTTCGAGAACCCCACTGTGCAGCGGTTCCTGGAGTGGGCCAAGGACACCTAC 149 Query 108297 AGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTCCGTGGATGCCTGGCTCTG 108354 ||||||||||| ||| ||||||||||||| | || ||| ||| | |||| ||| | Sbjct 148 AGCCCCGACGAGCACGTCTGGGCCACCCTCAACCGCATGC-CCG-GCGTGCCAGGCGCCA 91 Query 108355 TTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGT 108414 | || | ||||| || |||| ||||||| ||| | || | || ||||||| Sbjct 90 TGCCCCAGAATGACAAGTTCCAGCTCTCGGACATGAACGCCCTGCCCCGCCTGGTCAAGT 31 Query 108415 GGCAGTACCACGAGGGAGATGTCAGCATGG 108444 ||||||||| ||||| || ||||| || Sbjct 30 GGCAGTACCTGGAGGGCGACACCAGCAAGG 1 >seq2783 Length=61987 Score = 89.7 bits (98), Expect = 4e-13 Identities = 195/288 (68%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || ||||| || || | || ||||| || ||||| | Sbjct 50945 TTGAGTGGGCAAAAGACACTTACAGCCCAGATGAGTATCTGTGGGCAACAATTCAGAGAA 50886 Query 108334 CTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACT 108392 ||| || | | || || | ||| || ||||||| | | || ||||||| Sbjct 50885 -TCCCTGAAGTCCCAGGTGCAGTTTCTTCTAGTGGCAAGTATGATGTTTCTGACATGAAC 50827 Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452 || | |||||| | ||||||||||||||| || || ||||| || || || || Sbjct 50826 GCACTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTGTCCAAAGGTGCACCC 50767 Query 108453 TATGCACCCTGCTCTGGAATCCA---TCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 || |||| ||| |||| | || ||| || |||| ||| |||| || ||| Sbjct 50766 TACCCACCATGCAGTGGAGTTCACGTTCGCTCGG---TCTGTGTTTTTGGGGTAGGAGAC 50710 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| ||||||| || | ||||| ||| |||| || || ||||||||| Sbjct 50709 CTGAACTGGATGCTACGAAACCACCACTTCTTTGCTAATAAGTTTGAC 50662 Score = 82.4 bits (90), Expect = 5e-11 Identities = 237/361 (66%), Gaps = 4/361 (1%) Strand=Plus/Minus Query 107670 AGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCG 107729 ||||||| ||| | || || || || ||||| || || || ||||| ||||| Sbjct 51552 AGGAAGTACATTATGCAACCTCTCAGCAATGAAGAAGCGGAATTTCCAATTGCTTACTCA 51493 Query 107730 ATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCT 107789 || ||||| || | || ||||| | |||| | || || || | | ||||||||| Sbjct 51492 ATAGTGGTTTATCACAAAATTGAGATGCTTGATAGACTTCTAAGATCAATCTATGCCCCT 51433 Query 107790 CAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTC 107849 ||||| | ||||| | || || || ||||| ||||| |||| | || || Sbjct 51432 CAGAATTTTTACTGCATTCATGTTGACAGAAAGTCTCCAGAATCTTTTTTTGCTGCTGTG 51373 Query 107850 AAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTT 107909 |||| || | || || || |||||||| || |||| |||| | || || Sbjct 51372 AAGGGAATAGTCTCATGTTTTGATAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTTGTA 51313 Query 107910 TATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGC 107969 ||||| || ||| ||| ||||| || ||| | ||||| ||| |||| | || |||| Sbjct 51312 TATGCTTCATGGAGCAGGGTGCAGGCAGACATTAACTGCATGAAAGA-TCTCTACAGA-A 51255 Query 107970 TCAGTGCCA--TGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCA 108027 ||| | | ||||| ||| || | || || || | ||||| || |||||||||| Sbjct 51254 GAAGTTCAAACTGGAAATACCTAATAAACCTCTGTGGCATGGACTTTCCTATAAAGACCA 51195 Query 108028 A 108028 | Sbjct 51194 A 51194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348041828216676