Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq15305 120 3e-22 seq10859 105 6e-18 >seq15305 Length=33806 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 |||||||||||| || ||||| || ||||| ||||| |||||||| || || || || Sbjct 10416 ACCTCGTCTTTGCTGGTATACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTC 10357 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 ||||| || ||| ||||| || || ||||| || || ||||||||||||||||| ||| Sbjct 10356 CCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTAGAGCATGTACGGTGTG 10297 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| || || ||||| || Sbjct 10296 CCGGTCTCTGTCTGAGATTCAATGATAGC 10268 >seq10859 Length=4031 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||||||||| || |||||| | || ||||| || Sbjct 459 CATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAGGTTGAGCCCAG 518 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || ||||||||||||| | || ||||| || Sbjct 519 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 578 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| ||||||| || || ||| || || Sbjct 579 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCACCTTGTCCGACTACAA 638 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || ||||| || ||||| ||||| || || | ||||| || || Sbjct 639 CATCCAGAAAGAGTCTACTCTGCATCTTGTGCTGCGCCTGAGAGGTGG 686 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||||||||| || |||||| | || ||||| || Sbjct 687 CATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAGGTTGAGCCCAG 746 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || ||| | || ||||||||||||| | || ||||| || Sbjct 747 TGACACCATTGAGAACGTGAAAGCTAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 806 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| ||||||| || || ||| || || Sbjct 807 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 866 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || ||||| || | ||||| || || | |||||||| |||| Sbjct 867 CATCCAGAAGGAATCCACCTTGCATCTTGTGCTGCGTCTGAGGGGTGGTA 916 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || ||||| ||||| ||||| || |||||| |||| ||||| || Sbjct 229 AAAATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGCCC 288 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | || | || || | || ||||||||||||| | || ||||| Sbjct 289 AGTGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGAT 348 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || || || ||||| ||| ||||||| || || ||| || Sbjct 349 CAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTAC 408 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || ||||| || | ||||| || || | ||||| || || Sbjct 409 AACATCCAGAAGGAATCCACCTTGCATCTTGTGCTGCGCCTGAGAGGTGG 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445468438594080