Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq18951 120 4e-22 seq7229 105 9e-18 seq15305 96.9 5e-15 >seq18951 Length=8232 Score = 120 bits (132), Expect = 4e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| |||||| || | |||| | | ||||| || ||||||||||||||||| ||| Sbjct 1313 TATTTTTTATTAAATGCCTCCAGTAAACGCAACAGGTGTAAGAACAGATTGATGATGTCC 1372 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||||||| |||||| | || | | || |||||||| || | || || || ||| | Sbjct 1373 AAGTAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGGGATAATTTGTGCATCAGTAAA 1432 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 || |||||||| ||||| ||||| ||||| | ||| || || ||||| | |||| | Sbjct 1433 TGAGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCGGCAGCAGCAAACACCAAC 1492 Query 9408 TCCACTGTTTCACT 9421 || | ||| ||||| Sbjct 1493 TCTATTGTCTCACT 1506 Score = 107 bits (118), Expect = 3e-18 Identities = 102/130 (78%), Gaps = 4/130 (3%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||| || |||||||| || | |||||||||||||| ||||| Sbjct 2659 CCTGCTCCAAATTTGCTGAAGTCCCTCTTTGACTGCAAGGTATATGCAGTCAGTCCAAGA 2718 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC- 9598 || || |||||||| || || || ||||||| |||| ||||||||||||| | || Sbjct 2719 AATACAGCAGTAGTAAGAATAAAGGCTTGCAAGACGATGGACACATCATAGAAACTCACT 2778 Query 9599 ---AACAGAG 9605 ||||||| Sbjct 2779 ATAAACAGAG 2788 >seq7229 Length=62315 Score = 105 bits (116), Expect = 9e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 2448 CCTCATCTCTGCTGATGAGTTCATTAGAAAATGTGAGTCCAGGCATTAATCCTCTTTTCT 2389 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 2388 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 2329 Query 36300 C 36300 | Sbjct 2328 C 2328 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 36410 TCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 36469 || ||| |||||||| || || ||||| | |||||| |||||||| ||||| || ||| Sbjct 840 TCTTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTT 781 Query 36470 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAA 36529 || ||||| || || || || |||||||| | ||| || || |||||||||||| || | Sbjct 780 TCCATGGCGATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATCTGTACTTCTTGACTA 721 Query 36530 AATCGTTC 36537 || || || Sbjct 720 AACCGCTC 713 >seq15305 Length=33806 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || || ||||| || || |||||| || | || ||||| || ||||| | Sbjct 16702 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 16643 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | || || || |||||||||||||||||||||||||| ||||| || | || || | Sbjct 16642 TGAGGGACTGGCTCTGATCGATGAAGGCTCCCCTGTCTGCTGCCATCTTGAGGACAGTTT 16583 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | || ||||| | || ||||| | | |||| | || || |||| Sbjct 16582 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 16532 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||| ||||||||||| || | ||||| || ||||| || |||||||| || || || | Sbjct 14297 TACCTGAAATTCTCCCGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCAAT 14238 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 || || ||||| |||||||| |||||||| || ||||| ||||| || | | | | Sbjct 14237 GGATTCGTTATTGCCCAAAATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAAGGAGAAG 14178 Query 65300 ACTATTTCTAAGACCGTAT 65318 || ||||| | ||||||| Sbjct 14177 GCTGTTTCTCACACCGTAT 14159 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||| ||||| ||||||||||||||||| || || | ||| | ||||||| || || Sbjct 8817 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAAAAAAGGTCTCTGGCTCGCTGC 8758 Query 66120 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || || || || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 8757 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 8699 Query 66179 TTCCAAGTATATGGC 66193 |||| ||| ||||| Sbjct 8698 CTCCAGGTAGATGGC 8684 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || ||||||||||||||||| || || || || || || || | | Sbjct 2725 CACTGAATACTTTCTTAGTTTCTTTGTGTAGATTGGACACTGCAATCCTTGCTGCCAGGA 2666 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | || || || || |||| || || || || || |||| || |||||||| |||| Sbjct 2665 TAGCGTAGTCAGGGTGTTTGGTGGTCAGGGTTGCAGCCGTTTCAGCAGCCAGAGTATCCA 2606 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | || | || || || || ||||| Sbjct 2605 GTTCCACTGTCGTGACACCACTGTACAGGCCCTGAATCACTTTCAT 2560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657732860846160