Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq10859 107 2e-18 seq15305 96.9 3e-15 >seq10859 Length=4031 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || ||||| || ||| || |||| | ||||| ||||| || || Sbjct 656 GTAGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCTTCCAGCTGCTTGCCT 597 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||||||||| || |||||||| ||||| ||| || || Sbjct 596 GCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 537 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||| ||||| | ||| | |||||||| |||| || Sbjct 536 ACATTCTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCTGTCAGGGTC 477 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 476 TTCACAAAGATCTGCAT 460 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || || || ||||| || ||| || |||| | ||||| ||||| || || Sbjct 428 GTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCT 369 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||||||||| || |||||||| ||||| ||| || || Sbjct 368 GCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 309 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||| ||||| | ||| | ||||||||||||| || Sbjct 308 ACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 249 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 248 TTCACAAAGATCTGCAT 232 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || || || ||||| || ||| || |||| | ||||| ||||| || || Sbjct 884 GTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCT 825 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||||||||| || |||||||| ||||| ||| || ||| Sbjct 824 GCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCTTTC 765 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||| ||||| | ||| | |||||||| |||| || Sbjct 764 ACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCTGTCAGGGTC 705 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 704 TTCACAAAGATCTGCAT 688 >seq15305 Length=33806 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 153684 ACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTT-TGATTGCTTTT 153742 |||||||| | ||||| |||||||||||| || | || ||| | || |||||||| || Sbjct 10392 ACTATTTCTGTACACAGATTGCTGCATTTGATG-GTCCCCAAGTTCTGCTGATTGCTCTT 10334 Query 153743 GCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTAT 153802 ||||| |||| ||| ||||| |||||||| ||||||||||| || | ||| ||| || Sbjct 10333 CCGGTTGCAAGAGTCTTTGTAGAGCATGTACGGTGTGCCGGTCTCTGTCTGAGATTCAAT 10274 Query 153803 AATAG 153807 |||| Sbjct 10273 GATAG 10269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495732418420800