Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq17223 123 3e-23 seq7229 114 2e-20 seq15305 102 1e-16 >seq17223 Length=94229 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 11068 CCTCATCTCTGCTAATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 11009 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| |||| ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 11008 TCAGCCAAAAAATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 10949 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | || ||| || Sbjct 10948 CAACCACTCGCTCACC 10933 >seq7229 Length=62315 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 2448 CCTCATCTCTGCTGATGAGTTCATTAGAAAATGTGAGTCCAGGCATTAATCCTCTTTTCT 2389 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 2388 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 2329 Query 42207 C 42207 | Sbjct 2328 C 2328 Score = 96.9 bits (106), Expect = 5e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 42317 TCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376 || ||| |||||||| || || || || | |||||| |||||||||||||| || ||| Sbjct 840 TCTTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTT 781 Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAA 42436 || ||||| ||||| || || |||||||| | || || || | |||||||||| || | Sbjct 780 TCCATGGCGATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATCTGTACTTCTTGACTA 721 Query 42437 AATCGTTC 42444 || || || Sbjct 720 AACCGCTC 713 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| |||||||| | || |||||||| || || || || || ||||| ||||| ||| Sbjct 3738 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 3679 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 |||| || || ||||||||||| ||||| ||||| Sbjct 3678 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 3644 >seq15305 Length=33806 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| || || || ||||| || || |||||| ||| | || || || ||||| || | Sbjct 16702 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 16643 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | ||||| || |||||||||||||||||||||||||| ||||| || | || || | Sbjct 16642 TGAGGGACTGGCTCTGATCGATGAAGGCTCCCCTGTCTGCTGCCATCTTGAGGACAGTTT 16583 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | || ||||| | || ||||| | | |||| | || || |||| Sbjct 16582 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 16532 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| ||||||||||||||||| || || | ||| || ||||||| || ||| Sbjct 8817 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAAAAAAGGTCTCTGGCTCGCTGC 8758 Query 72082 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 || || || || || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 8757 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 8699 Query 72141 TTCCAAGTATATGGC 72155 |||| ||| ||||| Sbjct 8698 CTCCAGGTAGATGGC 8684 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 ||| ||||||||||| || | ||||| || ||||| || |||||||| || || || | Sbjct 14297 TACCTGAAATTCTCCCGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCAAT 14238 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 71249 || || ||||| |||||||| |||||||| || ||||| ||||| || Sbjct 14237 GGATTCGTTATTGCCCAAAATCTGAGCAGTAGAAGCAGTTGGCATGGG 14190 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| |||| ||| || ||||| ||||||||||| || || || || || || || || | Sbjct 2725 CACTGAATACTTTCTTAGTTTCTTTGTGTAGATTGGACACTGCAATCCTTGCTGCCAGGA 2666 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | || || || || |||| || || || || || |||| || |||||||| |||| Sbjct 2665 TAGCGTAGTCAGGGTGTTTGGTGGTCAGGGTTGCAGCCGTTTCAGCAGCCAGAGTATCCA 2606 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 ||| || || || || ||| | || | || || || || ||||| Sbjct 2605 GTTCCACTGTCGTGACACCACTGTACAGGCCCTGAATCACTTTCAT 2560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670690593780240