Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq30824 149 9e-31 seq41622 104 3e-17 >seq30824 Length=29720 Score = 149 bits (164), Expect = 9e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| ||| ||||| || || || || ||| ||| |||||||| ||| ||||||| Sbjct 26339 ATGAGTCTAGTAGTCTGGAAGAGCTGCTCATCATCCCACTCTGGATGCTCTTGTTTCAGG 26398 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || |||| |||||||||||| ||||| || |||||||||||||| | || || Sbjct 26399 ATGTCACAGACTCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCTGGG 26458 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| || || |||| || || |||| | ||| | ||| || || | ||||| Sbjct 26459 ACCAAACCGAATACCTCCTGCCCAACAGAAAACTGCAAGTGTTCAGGTACATGAGGAGGG 26518 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | | || || || |||| |||||||||||||| || ||||| ||| Sbjct 26519 TAGATCATCTCTGCTTGAGTGTCCTTCACCGTTGGGGGATACATTTCTCCATCAATTATC 26578 Query 9862 TG 9863 || Sbjct 26579 TG 26580 Score = 141 bits (156), Expect = 1e-28 Identities = 219/309 (71%), Gaps = 3/309 (1%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || || || ||||| || ||| | |||| || ||| | | ||| Sbjct 24353 GGAAAGCAGTGAAGGGGCAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 24412 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| | ||| ||||||||||| || |||||||| | |||| Sbjct 24413 TATTGATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGCTTCCAGTACTCTGGGG 24472 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | ||||| | || |||| || ||||| || || ||||| || || | || | || Sbjct 24473 AACAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATTTCCACCATTG 24532 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCC 8917 | ||||| |||||||| || || |||||||| | |||||| || | ||||| |||| Sbjct 24533 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTA-CAAGAAGGCCTGGGTACAGCTCC 24591 Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT- 8976 | || || |||||||| ||||| | ||||| || || ||||| ||||||||||| Sbjct 24592 ATCGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCCGCCATTTCTTTTTCTCCTGTA 24651 Query 8977 TTTATTAAT 8985 |||| ||| Sbjct 24652 ATTATCAAT 24660 Score = 95.1 bits (104), Expect = 2e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | || |||||||| || | ||||| || || | |||| ||| Sbjct 28240 ACCTTTAACACCCATTGGTGTTGGACAGTCAAGTCCTACCGGTGGAAGGCTTCTTGTGTA 28299 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 |||||| |||||||| |||||||||||||| ||| || || |||||| | || Sbjct 28300 ATAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTATAATCACTGTTGTAAGTTGG 28359 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAACAAGCAAAA 10448 |||||||||||||| | ||||| ||||| ||| |||| Sbjct 28360 TGGGCTGTCAATCAAGTGTGATCTTGCTGAAAAAGAAAAA 28399 >seq41622 Length=5892 Score = 104 bits (114), Expect = 3e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || ||||||| || || |||||||||||||| | |||| Sbjct 5545 TCTTAACTATCTCAAAGCCAGTTGCTCCGCCAAATGTACTGGGTTTCCAGTACTCTGGGG 5604 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || || ||||||||||| || | ||| | |||| Sbjct 5605 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGAGAAAACGGAGCTCCGATCTCCACCATGC 5664 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || || | ||||| | || || || | || || || | || ||||||| Sbjct 5665 TTTCCCCAAAAATACCATTGGGTTGAGGTTTCTCAAGCAGCAAACCCGGATAAAACTCCA 5724 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 5725 GAGCATCAATGTCTCCATACAG 5746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708051204310560