Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq30824 125 1e-23 seq41622 100 4e-16 seq6597 86.0 9e-12 >seq30824 Length=29720 Score = 125 bits (138), Expect = 1e-23 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| || || || | |||||| ||| |||| || || || || ||||| || Sbjct 26339 ATGAGTCTAGTAGTCTGGAAGAGCTGCTCATCATCCCACTCTGGATGCTCTTGTTTCAGG 26398 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||| | ||||||||| ||||||||||| || ||||||||||| || || || Sbjct 26399 ATGTCACAGACTCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCTGGG 26458 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||| || || || | ||| || | ||| ||| | || || || | || | Sbjct 26459 ACCAAACCGAATACCTCCTGCCCAACAGAAAACTGCAAGTGTTCAGGTACATGAGGAGGG 26518 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | | || || || || || || |||||||||||||| || ||||| | | Sbjct 26519 TAGATCATCTCTGCTTGAGTGTCCTTCACCGTTGGGGGATACATTTCTCCATCAATTATC 26578 Query 9967 TG 9968 || Sbjct 26579 TG 26580 Score = 123 bits (136), Expect = 4e-23 Identities = 205/296 (69%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || || || || ||||||||| || ||||| ||| | || || | Sbjct 24353 GGAAAGCAGTGAAGGGGCAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 24412 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || ||||||||||| || ||||||||| | |||| Sbjct 24413 TATTGATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGCTTCCAGTACTCTGGGG 24472 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 | ||||| | || |||| || ||||||| || ||||| || || | || | || Sbjct 24473 AACAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATTTCCACCATTG 24532 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || || || ||||| || | | ||| | ||| || || | Sbjct 24533 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTACAAGAAGGCCTGGGTACAGCTCCA 24592 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || || | ||| ||||| || |||||| || || || || || || || ||| Sbjct 24593 TCGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCCGCCATTTCTTTTTCTCCT 24648 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 || || |||||||| | ||| || | | || |||| | ||| ||| | ||| Sbjct 25171 ATAGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCATGTATCTGGAAAGTG 25230 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | |||||| ||||||| |||||||| || ||||| |||||||||||| Sbjct 25231 TCAGGCAGAAGTGGGTGCCAGTGGTAGAGAGTATTGAATTCAGCCGCAATTCGGTTCTGG 25290 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || || || | || | ||||||||| | Sbjct 25291 TATTGAAATCGCTGGT--TGAACAGCAGCTCAGGATCGAACTTGAGTTTGAAGTGGTAGC 25348 Query 9671 CGCTGAGTTGCTGGACATA 9689 | || | || ||||| || Sbjct 25349 CACTCAAGTGTTGGACGTA 25367 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 |||||| || || | || || || |||||| | ||||| || || |||| || || Sbjct 28240 ACCTTTAACACCCATTGGTGTTGGACAGTCAAGTCCTACCGGTGGAAGGCTTCTTGTGTA 28299 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 |||||| ||||| ||| | ||||||||||| ||||| | |||||| |||||| || Sbjct 28300 ATAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTATAATCACTGTTGTAAGTTGG 28359 Query 10509 GGGACTGTCAATCA 10522 || |||||||||| Sbjct 28360 TGGGCTGTCAATCA 28373 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 10863 CATAAAACCCCGTCCGCGTACAATCGCACCAATAACGATCAAACCCCACCGTCATGCATA 10922 |||||||||| |||| ||||| || || ||| ||||||| || |||||||||| Sbjct 29125 CATAAAACCCTGTCCTTGTACAGTCACATTCATACTGATCAAATCCTGTTGTCATGCATA 29184 Query 10923 CCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTTGGCT 10963 | |||| |||||||| |||| || ||||||||||||||| Sbjct 29185 CTCCTCTGTTCTGGCAGGGGTTTGAGCAGCAAGGGTTGGCT 29225 >seq41622 Length=5892 Score = 100 bits (110), Expect = 4e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 ||||| || || ||||||||||||||| | |||||||||||| ||| | | ||||| Sbjct 5571 CCGCCAAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCCCC 5630 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| ||||||||||| || | ||| | ||||| || || || || || ||| | Sbjct 5631 TTCAGAGAAAACGGAGCTCCGATCTCCACCATGCTTTCCCCAAAAATACCATTGGGTTGA 5690 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| || | | || || | || | || | ||| || | ||| ||||| || || Sbjct 5691 GGTTTCTCAAGCAGCAAACCCGGATAAAACTCCAGAGCATCAATGTCTCCATACAGCTCT 5750 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||| ||| || || |||| | ||| ||| || Sbjct 5751 TCCAGCTCTGCCGCCTTCTCTTCCTCTCCTGCA 5783 >seq6597 Length=2960 Score = 86.0 bits (94), Expect = 9e-12 Identities = 161/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 9487 ATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCT--ATGC 9544 ||||| ||||| ||||||| | ||| || ||||| | |||| | | ||| ||| Sbjct 2803 ATGAGCATGGAGGTGTTGTATAGGAACTGCTCGTAGCTGTACTCTTC--CCCCTGGATGA 2746 Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 || || |||| ||| |||||| | ||||| |||||||| |||| || | Sbjct 2745 CGAAGGAGTCGGGCATCAGCCCGTGCCAGTGATAGAGCTGGTTGAACTCCACCGCGATGC 2686 Query 9605 GGTTCTGGTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGT 9664 | ||| ||||||| || || || ||||| | ||| ||||| || | || | || Sbjct 2685 GATTCCGGTACTGGAACTGCGTCCCAAACAGCAGCTCGGGGTCGAACTTGAGGCTCAGGT 2626 Query 9665 GGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 |||||||||||| ||||||||||| | | || | || |||||||| ||||| Sbjct 2625 AGTACCCGCTGAGGTGCTGGACATAGTCTTCAATGACGATCTTAATGGTCTCCCC 2571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723244242111600