Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq756 125 5e-23 seq19879 102 6e-16 seq13605 98.7 8e-15 seq27609 89.7 4e-12 >seq756 Length=2765 Score = 125 bits (138), Expect = 5e-23 Identities = 669/1057 (63%), Gaps = 24/1057 (2%) Strand=Plus/Minus Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324 || || || |||||||||||||| | ||||| ||||| ||||| || ||||| || | Sbjct 1927 ACGTTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCAATCTGGGGGACTCCACGG 1868 Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 517384 | || || ||||| ||| | | ||| | ||||| || || || || || | Sbjct 1867 GGTGCCGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCTTCGTCATA 1808 Query 517385 TTTCGTTCACCCTCGAAAATTTGGAT-AGTAA-CTACAGTTTGATTATCTGAATAAGTTG 517442 | ||||||||| | | |||| || | || | | || || ||||| || || | Sbjct 1807 GCCCTCTCACCCTCGTACACCTGGACCAGGACGCTGC--TCTGGTTGTCTGAGTAGGTGG 1750 Query 517443 TAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATA 517501 | || |||| | | || ||||| || ||||| | | || | | ||||| Sbjct 1749 TGAAGG-TCTGAGTCTGCTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGCAGTCATC 1691 Query 517502 ATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT 517561 | ||||| || || || | || ||||| ||||| |||||||| | || | | || Sbjct 1690 ACTCCACCGGCCGTCTCAATGCCCAGAGACAGAGGGGTGACATCCAACAGCAGCAGATCC 1631 Query 517562 TGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 517621 || | || ||| | | || | || ||||||||||| | |||||||||||| ||| Sbjct 1630 TGCACGTTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCACCATAAGCA 1571 Query 517622 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGA 517681 ||||||||||| || || | | | || || | |||||||||||| || | ||| Sbjct 1570 ACAGCTTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTACCATTGAAGAAGTCCTGAAGC 1511 Query 517682 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 517741 || | | | ||| || ||||||| || || || || || ||||| || || | ||| Sbjct 1510 AGCTTTTGGATCTTGGGGATACGAGTGGAGCCACCCACCAACACAATCTCCTGGATCTGG 1451 Query 517742 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAAC 517801 || || || || | ||| | | | || || || || || || | | || Sbjct 1450 CCCTTGTCTAGCTTGGCATCACGCAGAGCCTTCTCCACTGGCTCCAGGGTGCCACGGAAG 1391 Query 517802 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCT 517861 | || | | || || || || || | ||||| | | | ||||||| || Sbjct 1390 AGATCAGCATTGAGCTCCTCAAAGCGGGCACGAGTAATGGAGGTGTAGAAATCAATGCCC 1331 Query 517862 TCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA--AGATAGTGCACGTTTAG 517919 || | | || |||| ||||| ||| ||| || ||||| || |||| || || | Sbjct 1330 TCATAGAGGGAGTCAATCTCAATGCTAGCTTGCGTGGAAGAGCTGAGAGTG--CGCTTTG 1273 Query 517920 CACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGT 517977 | | ||||| || || | |||| | | || | ||| ||| | | || Sbjct 1272 CCCTCTCACAAGCCGTACGCAGTCGCCTCACCGC--TCGCTTGTTGCCAGCAATGTCGCG 1215 Query 517978 TTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCT 518035 || | || | |||||| ||||| |||| ||| | || | || || ||||| || Sbjct 1214 CTTGTGCTTACGCTTGAATTCTTC--CACAAAATGGTTCACCATGCGGTTGTCAAAGTCC 1157 Query 518036 TCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGA 518095 || || |||| | |||| || | || | | || | || | |||||| |||| Sbjct 1156 TCCCCACCCAGATGGGTATCACCGGCTGTGGACTTCACCTCAAAGATTCCATCCTCAATG 1097 Query 518096 GACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT 518155 | | | | ||||||| || || || |||| ||||| || || |||||| | ||| Sbjct 1096 GTAAGGATGGATACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACATTCTTCTCT 1037 Query 518156 TTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 518209 | || || || || | ||||| || | |||||| || || || ||||| Sbjct 1036 CCAGCCCGGGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCTGTAGGCTCATTG 977 Query 518210 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 518269 ||||| | || |||||||| |||| || | || |||||||| ||||| || | || Sbjct 976 ATAATACGCATCACATTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCCTGGCGCTGG 917 Query 518270 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || || || || || ||||| || || || || |||| Sbjct 916 GAGTCATTGAAGTAAGCAGGCACGGTGATGACAGCAT 880 >seq19879 Length=7372 Score = 102 bits (112), Expect = 6e-16 Identities = 358/552 (65%), Gaps = 14/552 (3%) Strand=Plus/Plus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 ||||| || || ||||| ||||||||||| | | | | || || | ||| |||||||| Sbjct 5148 GCACCGTAAGCCACAGCCTCATCAGGATTGATACTCTTGTTCAGCTCTTTGCCATTGAAG 5207 Query 517670 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 |||| || |||| ||| | ||| || ||||||| || || ||||| | || || Sbjct 5208 AAATCCTGCAGCAGTT-TCTGAATCTTTGGGATACGAGTAGACCCACCAACCAGCACGAT 5266 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 || || | ||| ||||| || ||||| | |||| | | ||||| || || || || Sbjct 5267 GTCGTGGATCTGCGATTTGTCAAGTTTGGCATCCCGCAGGGCCTTTTCCACAGGATCCAG 5326 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT- 517847 | | |||| ||| | | || ||||| || |||||| ||| | ||| | Sbjct 5327 GGTGCCACGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTA--ATGGACGTG 5384 Query 517848 TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 517906 || || ||||| || || | | |||||||| |||||| | | || || |||||| Sbjct 5385 TAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTAGAAGAC 5444 Query 517907 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCTGA 517962 || | ||| || ||||| || ||||| || | || | || | | ||| | || Sbjct 5445 AGAGTACGCTTTGCACGCTCGCATGCAGTGCGGAGGCGACGAACTGCTCTCTTGTTCTCG 5504 Query 517963 TTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACG 518022 |||| || | || | || | |||||| || | | | | || | || Sbjct 5505 CTGAT----GTCCTTCTTGTGCTTGCGCTTGAATTCAGCGATGAAGTGGTTGACCATGCG 5560 Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 || ||||| ||||| || ||||| | ||| | |||| || | | | || | || | Sbjct 5561 GTTGTCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGAT 5620 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 |||||||||| || ||||| | ||||| ||| ||||| || | ||||| || || Sbjct 5621 GCCATCTTCAATAGTCAAAATTGACACATCGAAGGTGCCACCTCCAAGGTCAAAGATGAG 5680 Query 518143 TACATTCATTTC 518154 |||||| |||| Sbjct 5681 AACATTCCTTTC 5692 >seq13605 Length=33737 Score = 98.7 bits (108), Expect = 8e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 366997 GTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCAT 367056 || || ||| | |||||||| ||||| || |||||| | ||| | | | ||||||||| Sbjct 20311 GTGGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTATTCAT 20252 Query 367057 TATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGAT 367116 || || || || ||| | || ||| ||||||||||||||||| ||||| ||||||||| Sbjct 20251 TACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCGTGAT 20192 Query 367117 GG 367118 || Sbjct 20191 GG 20190 >seq27609 Length=26387 Score = 89.7 bits (98), Expect = 4e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213 ||||||||| || || |||||||| |||| ||||| || |||||||||||||| | Sbjct 4935 CTTTGTCTTCAGACTTGTCCAGACCATAGGCAAGTGCAGCTGCTGTTGGTTCATTAATCA 4876 Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262 |||||||||||| | |||||||| || |||||||| ||||| || Sbjct 4875 CTCTCAAAACATTCAAGCCAGCAATCTGCCCAGCATCTTTCGTGGCCTG 4827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3778168843976644