Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq19879 131 1e-24 seq756 91.5 1e-12 >seq19879 Length=7372 Score = 131 bits (144), Expect = 1e-24 Identities = 117/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| ||| | ||||||||||| ||||| |||||||| || ||||| ||||| Sbjct 5953 GTTACTAATGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACA 5894 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || || ||||| || || ||||||||||| || || ||| Sbjct 5893 AAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAATGAGCCAACAGCT 5834 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| | || ||||| || || ||| Sbjct 5833 GCTGCGATAGCTTATGGTCTGGACAAA 5807 Score = 100 bits (110), Expect = 2e-15 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | || || ||| | || ||||| ||| ||||||||||| | ||| | || || Sbjct 6945 AGCTGTCGGAATTGATCTTGGCACCACCTATTCCTGTGTTGGTGTATTCCAACACGGGAA 6886 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||| ||||||||||| || |||||| | || || ||| |||||| | ||||| Sbjct 6885 GGTGGAAATCATTGCCAATGACCAGGGTAACCGGACCACGCCAAGCTATGTTGCCTTCAC 6826 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACC 550168 || || || || | |||||||| ||||| | |||| || || ||||| ||| Sbjct 6825 AGACACAGAGAGGTTGATCGGTGATGCTGCAAAGAACCAAGTTGCAATG--AATCCGACC 6768 Query 550169 AATACTATTTTTG 550181 ||||| |||||| Sbjct 6767 AATACAGTTTTTG 6755 Score = 86.0 bits (94), Expect = 5e-11 Identities = 223/340 (66%), Gaps = 0/340 (0%) Strand=Plus/Minus Query 551899 TTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAA 551958 ||||||| || | ||||| ||||| | || || || |||| || ||| | || || Sbjct 5487 TTCGTCGCCTCCGCACTGCATGCGAGCGTGCAAAGCGTACTCTGTCTTCTAGCACGCAGG 5428 Query 551959 CCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGG 552018 ||| ||||||| | ||||| | | |||||| ||||| | | ||| | ||| | || | Sbjct 5427 CCAGTATTGAAATTGATTCTCTCTATGAGGGTATTGACTTCTACACGTCCATTACCAGAG 5368 Query 552019 CCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAG 552078 | |||||||| | | |||| || || | || | || || || ||| | | Sbjct 5367 CTCGCTTTGAAGAGCTGAATGCTGACCTGTTCCGTGGCACCCTGGATCCTGTGGAAAAGG 5308 Query 552079 TTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGAT 552138 | | ||| | || |||| ||||| | | || || || ||||| |||||||| | Sbjct 5307 CCCTGCGGGATGCCAAACTTGACAAATCGCAGATCCACGACATCGTGCTGGTTGGTGGGT 5248 Query 552139 CTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAA 552198 |||| | || || || |||| || || | || |||||||| ||| | | | Sbjct 5247 CTACTCGTATCCCAAAGATTCAGAAACTGCTGCAGGATTTCTTCAATGGCAAAGAGCTGA 5188 Query 552199 ATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGC 552238 | | ||| | ||||| ||||||||||| || || ||||| Sbjct 5187 ACAAGAGTATCAATCCTGATGAGGCTGTGGCTTACGGTGC 5148 >seq756 Length=2765 Score = 91.5 bits (100), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || || || || || || || |||||||| || || || || || ||||||| Sbjct 880 ATGCTGTCATCACCGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATG 939 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| |||||||| | |||||||||||||| ||||| || ||||| Sbjct 940 CTGGCACCATCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCTACAGCAGCTGCTA 999 Query 550518 TTGCATATGGACTTG 550532 | || ||||| |||| Sbjct 1000 TAGCCTATGG-CTTG 1013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026468053712260