Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq15305 93.3 8e-14 seq17223 91.5 3e-13 >seq15305 Length=33806 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791 |||||||| ||| ||||||||| | || |||||||| || |||||||| ||||||||| Sbjct 10416 ACCTCGTCTTTGCTGGTATACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTC 10357 Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCG 221851 |||| || | ||||| ||| || ||| || ||| ||||||||||| | || | Sbjct 10356 CCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTAGAGCATGTACGGTGTG 10297 Query 221852 CCAGTCTCCAGCTGAG 221867 || ||||| ||||| Sbjct 10296 CCGGTCTCTGTCTGAG 10281 >seq17223 Length=94229 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| ||||||||||| || || |||||||| || ||||| ||||| Sbjct 10933 GGTGAGCGAGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 10992 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCT 25991 || || || ||||| ||| ||| ||| ||||| || ||| ||||| ||||| || || Sbjct 10993 GCTATTTTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTG-ACTTTCTCCAATGAACT 11051 Query 25992 CATCAGCAGGGACGAGG 26008 ||| ||||| || |||| Sbjct 11052 CATTAGCAGAGATGAGG 11068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928223936914560