Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq19879 125 5e-23 seq27609 86.0 4e-11 seq13605 86.0 4e-11 >seq19879 Length=7372 Score = 125 bits (138), Expect = 5e-23 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| |||| ||| | ||||| ||||| ||||| ||||| ||||| ||||| || || Sbjct 5953 GTTACTAATGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACA 5894 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| |||| |||||||| || ||||| | || ||||| ||||| |||||||| Sbjct 5893 AAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAATGAGCCAACAGCT 5834 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || | ||||||||||| || || || Sbjct 5833 GCTGCGATAGCTTATGGTCTGGACAAAAA 5805 Score = 100 bits (110), Expect = 2e-15 Identities = 222/328 (68%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||| || || ||||| ||||| |||| |||||| || || | | | ||||| || Sbjct 5473 ACTGCATGCGAGCGTGCAAAGCGTACTCTGTCTTCTAGCACGCAGGCCAGTATTGAAATT 5414 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 |||||||| | ||| || ||||| | | || ||||| || ||| |||||||| Sbjct 5413 GATTCTCTCTATGAGGGTATTGACTTCTACACGTCCATTACCAGAGCTCGCTTTGAAGAG 5354 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| || || | || | || || || ||| | | || | ||| | Sbjct 5353 CTGAATGCTGACCTGTTCCGTGGCACCCTGGATCCTGTGGAAAAGGCCCTGCGGGATGCC 5294 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 |||||||||||||| || |||| || || || || || || || || || | || ||| Sbjct 5293 AAACTTGACAAATCGCAGATCCACGACATCGTGCTGGTTGGTGGGTCTACTCGTATCCCA 5234 Query 475736 AA-AATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAATGAAAGTGTAA 475793 || | | ||| || ||| | || || | || ||||| ||| || | || | ||| | | Sbjct 5233 AAGATTCAGA-AACTGC-TGCAGGATTTCTTCAATGGCAAAGAGCTGAACAAGAGTATCA 5176 Query 475794 ATCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||||| ||||| || || || || Sbjct 5175 ATCCTGATGAGGCTGTGGCTTACGGTGC 5148 Score = 98.7 bits (108), Expect = 6e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 4183 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 4124 Query 476150 AATGGTATTCTTAATGTTACTGCT 476173 ||||| || || ||||| ||||| Sbjct 4123 AATGGCATCCTGAATGTGTCTGCT 4100 >seq27609 Length=26387 Score = 86.0 bits (94), Expect = 4e-11 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 474778 TCAAGCAACTAAAGATGC-GGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATG 474836 ||| || || |||||||| ||| ||| |||| || | |||||||| | | ||||||| Sbjct 4826 TCAGGCCACGAAAGATGCTGGGCAGA-TTGCTGGCTTGAATGTTTTGAGAGTGATTAATG 4884 Query 474837 AACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAATTCTGACAAAG 474887 ||||||||||||| |||||||| |||||||| || ||| | ||||||| Sbjct 4885 AACCAACAGCAGCTGCACTTGCCTATGGTCTGGACAAGTCTGAAGACAAAG 4935 >seq13605 Length=33737 Score = 86.0 bits (94), Expect = 4e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || ||||| || |||||||||||||| ||| || | ||||| || || Sbjct 20190 CCATCACGACCAGCTCTCCCAATTTCTTGATAATAGGATTCCATTTCCTTAGGGGCACCG 20249 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 ||||| || || | | ||||| |||||| || |||||||||||||| | ||| || Sbjct 20250 TAATGAATAACCATCCGGATATCTGCTTTATTGATGCCCATTCCAAATGCCACTGTAGCC 20309 Query 627889 ACCAT 627893 || || Sbjct 20310 ACAAT 20314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265885440684152