Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq21406 176 5e-38 seq6668 167 3e-35 seq13043 134 2e-25 seq39392 131 2e-24 seq38047 125 9e-23 seq10300 87.8 2e-11 >seq21406 Length=1681 Score = 176 bits (194), Expect = 5e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 669 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 610 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 609 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 550 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 549 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 490 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 489 GCACCTGCTTCAGCACCTTGTA 468 >seq6668 Length=1120 Score = 167 bits (184), Expect = 3e-35 Identities = 158/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| || | ||| |||||||| ||||||||||| |||| || Sbjct 235 GCTTGGCCAGCTCGCCGGGCCGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 294 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 295 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 354 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||| ||||||| ||| | |||| ||||||||| |||||||| Sbjct 355 TGTCGTTGACGAACGAATTCATGATGCTCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 414 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 415 GCACCTGCTTCAGCACCTTGTA 436 >seq13043 Length=27760 Score = 134 bits (148), Expect = 2e-25 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | |||||||||||| ||||| ||||| || | | || Sbjct 12355 GCTTGGCCAGCTCTCCTGGGAGCAGCAGGCGCACGGCTGTCTGAATCTCCCGGGAGGTGA 12414 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| ||| || ||||||| || | | Sbjct 12415 TGGTGGAGCGCTTGTTGTAATGGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCAAAGA 12474 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 12475 TGTCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCGGGGT 12534 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 12535 GGACCTGCTTCAGCACCTTGTAGA 12558 >seq39392 Length=3064 Score = 131 bits (144), Expect = 2e-24 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || || || || ||||||||||| |||| | || Sbjct 2567 GCTTGGCCAGCTCGCCGGGCAACAGGAGCCGGACAGCCGTCTGGATCTCCCGCGAGGTGA 2626 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||| | ||||||| |||| | Sbjct 2627 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAGA 2686 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| || || ||||||| ||| | ||| || || || |||||||| Sbjct 2687 TATCGTTGACGAAGGAATTCATGATGCCCATGGCCTTCGAAGAAATACCGGTGTCGGGGT 2746 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| || |||||||| Sbjct 2747 GCACCTGCTTCAGGACCTTGTA 2768 >seq38047 Length=6184 Score = 125 bits (138), Expect = 9e-23 Identities = 147/202 (73%), Gaps = 5/202 (2%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| | ||||||||| | || ||| Sbjct 5610 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGGCTGGATCTCCCCCG--CCGT 5553 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||||||||||| || |||||| | ||||||| |||| | Sbjct 5552 NNNNNNNNNNNNNN---GAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 5496 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 5495 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 5436 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 5435 GCACCTGCTTCAGCACCTTGTA 5414 >seq10300 Length=34438 Score = 87.8 bits (96), Expect = 2e-11 Identities = 141/202 (70%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || ||||||| ||||||||||| | | || Sbjct 738 GCTTGGCCAGCTCTCCAGGCAGCAGGAGCTGCACGGCTGTCTGGATCTCCCACAACATGA 797 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || | ||||||| ||||||||| | |||||| | || || |||| Sbjct 798 TGATGGAGTGCTTGTT---GTGCGCCAGGCACGAGGCCTCACCAGCAATACGCTCGAAGG 854 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||||||||||||| ||| ||| | |||| |||||| || | ||| | Sbjct 855 TGTCGTTGACAAACGAGTTCGTGATGCCCATGGCCTTGGACGAGATGACCGTCTTGGGAT 914 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| |||||||| || Sbjct 915 GCACCTGCTTCAGCACCTTATA 936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6102750873141258