Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq21406 232 1e-54 seq6668 223 5e-52 seq38047 187 4e-41 seq13043 187 4e-41 seq39392 183 5e-40 seq10300 132 8e-25 seq11876 127 3e-23 seq5112 111 2e-18 >seq21406 Length=1681 Score = 232 bits (256), Expect = 1e-54 Identities = 205/256 (80%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 708 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 649 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 648 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 589 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 588 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 529 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 528 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 469 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 468 ACACGTAGATCGAGTA 453 >seq6668 Length=1120 Score = 223 bits (246), Expect = 5e-52 Identities = 203/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| || Sbjct 196 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCC 255 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 256 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 315 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| ||||| |||| Sbjct 316 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAATTCA 375 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 376 TGATGCTCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 435 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 436 ACACGTAGATCGAGTA 451 >seq38047 Length=6184 Score = 187 bits (206), Expect = 4e-41 Identities = 194/256 (76%), Gaps = 5/256 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 5649 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 5590 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| | ||||||||| | |||| | ||| Sbjct 5589 GCAGCAGCCGCACGGCCGGCTGGATCTCCC--CCGCCG-TNNNNNNNNNNNNNNGAGT-- 5535 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 5534 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 5475 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 5474 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 5415 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 5414 ACACGTAGATCGAGTA 5399 >seq13043 Length=27760 Score = 187 bits (206), Expect = 4e-41 Identities = 195/256 (76%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| || || | | Sbjct 12316 TGTACTTGGTGACAGCCTTGGTGCCCTCCGAGACCGCGTGCTTGGCCAGCTCTCCTGGGA 12375 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||| ||||| |||| | ||| ||| ||||||||| Sbjct 12376 GCAGCAGGCGCACGGCTGTCTGAATCTCCCGGGAGGTGATGGTGGAGCGCTTGTTGTAAT 12435 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || ||||||| || | ||||| ||||| || ||||||| Sbjct 12436 GGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCAAAGATGTCATTGACGAAGGAGTTCA 12495 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| |||||||| |||||||||| Sbjct 12496 TGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 12555 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 12556 AGACATAGATGGAGTA 12571 >seq39392 Length=3064 Score = 183 bits (202), Expect = 5e-40 Identities = 187/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 2528 TGTACTTGGTGACGGCCTTGGTCCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 2587 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||||||||| || | | ||| ||| ||||||||| | Sbjct 2588 ACAGGAGCCGGACAGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 2647 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| |||||| | ||||||| |||| || |||||||| || || |||| Sbjct 2648 GGGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAGATATCGTTGACGAAGGAATTCA 2707 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || || || || |||||||||||||||||| || ||||||| Sbjct 2708 TGATGCCCATGGCCTTCGAAGAAATACCGGTGTCGGGGTGCACCTGCTTCAGGACCTTGT 2767 Query 1485710 AAAC 1485713 | || Sbjct 2768 ACAC 2771 >seq10300 Length=34438 Score = 132 bits (146), Expect = 8e-25 Identities = 182/254 (72%), Gaps = 3/254 (1%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 |||||||||| ||||||||| |||||||||| || ||| ||||||| || || ||| Sbjct 701 TACTTGGTGATGGCCTTGGTGCCCTCTGAGAGAGCATGCTTGGCCAGCTCTCCAGGCAGC 760 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | || ||||||| ||||||||||| | ||| || | |||||| || || Sbjct 761 AGGAGCTGCACGGCTGTCTGGATCTCCCACAACATGATGATGGAGTGCTTGT---TGTGC 817 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||||| |||||| | || || |||| |||||||||||||||||||| || Sbjct 818 GCCAGGCACGAGGCCTCACCAGCAATACGCTCGAAGGTGTCGTTGACAAACGAGTTCGTG 877 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | ||| |||||| || | ||| ||||||||||| |||||||| || Sbjct 878 ATGCCCATGGCCTTGGACGAGATGACCGTCTTGGGATGCACCTGCTTCAGCACCTTATAC 937 Query 1485712 ACAAAGGACGAGTA 1485725 || || |||||| Sbjct 938 ACGTAGATCGAGTA 951 >seq11876 Length=5451 Score = 127 bits (140), Expect = 3e-23 Identities = 106/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 563 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 622 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| | | ||||||||| | Sbjct 623 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGGGGAGCGCTTGTTGTAGT 682 Query 1485590 GCGCCAGGCG 1485599 |||||||||| Sbjct 683 GCGCCAGGCG 692 >seq5112 Length=6004 Score = 111 bits (122), Expect = 2e-18 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 5374 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 5433 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 | ||| |||||||| |||||||| || || Sbjct 5434 GCAGCAGCCGCACGGCCGTCTGGATATCCCG 5464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7910558126725086