Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq10859 161 2e-34 seq17178 118 2e-21 >seq10859 Length=4031 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| ||||| || | ||||||||||| |||||||| || || || || || Sbjct 686 CCACCTCTCAGGCGCAGCACAAGATGCAGAGTAGACTCTTTCTGGATGTTGTAGTCGGAC 627 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||| || || || || |||||||| || || || ||||| || || Sbjct 626 AAGGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGGGA 567 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || ||||| ||||| || ||| | || || || Sbjct 566 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 507 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||||||||||| ||||| ||||| |||||||| Sbjct 506 TCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 460 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| |||||| || | |||| || ||||| ||||| || || || || | Sbjct 916 TACCACCCCTCAGACGCAGCACAAGATGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGG 857 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || || || |||||||| || || || ||||| || | Sbjct 856 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGG 797 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || ||||| ||||| || || ||||| || ||| | || || | Sbjct 796 GAATGCCTTCCTTGTCCTGGATCTTAGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAA 737 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || ||||||||||||| ||||| ||||| |||||||| Sbjct 736 CCTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 688 >seq17178 Length=43493 Score = 118 bits (130), Expect = 2e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208 || ||||||||||| ||| | |||||||| || ||||| || ||||| || || ||||| Sbjct 16696 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 16637 Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268 || ||||| || ||||| || ||||||| | || || ||||| ||||| || ||||| Sbjct 16636 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 16577 Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 || || | ||| | || ||||| ||| |||| || || |||| Sbjct 16576 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 16534 Score = 96.9 bits (106), Expect = 7e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 60310 AGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATGG 60369 ||| ||||||||||||||| ||||| | || || ||||| |||||||| | |||||||| Sbjct 14341 AGCTTTTTTCGGAGCTCAGATGAATGCATTTATTCATGTCATTATGTACATGTATTATGG 14282 Query 60370 TATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTAT 60429 | || || ||||| |||| ||| | || || | |||||||| || || | || || Sbjct 14281 ATTAGCTGCCTGTGGCCCTAAATTTCAGAAATACCTGTGGTGGAAACGATACTTGACCAT 14222 Query 60430 AATGCAATTGTTA 60442 | |||||||| || Sbjct 14221 ATTGCAATTGGTA 14209 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502 || |||||| | |||| || || || || |||| ||||| || |||||||| || || Sbjct 13701 CAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTTCCCT 13642 Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562 ||||||| || ||| || || | ||| || | || || || || |||||||||||| Sbjct 13641 AAATGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTCATTTTCCTGTTTGGTAAC 13582 Query 60563 TTCTATTTTAGAACATACAAG 60583 ||||| | | | ||||| ||| Sbjct 13581 TTCTACTATCGGACATATAAG 13561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981154515207686