Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq2783 129 7e-25 seq45461 96.9 4e-15 >seq2783 Length=61987 Score = 129 bits (142), Expect = 7e-25 Identities = 544/847 (64%), Gaps = 24/847 (3%) Strand=Plus/Plus Query 162160 ATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCAC 162219 ||||| || || || || || || || || || || || ||||| || || ||||| Sbjct 50699 ATCCAGTTCAGGTCTCCTACCCCAAAAACACAGACCGAGCGAACGTGAACTCCACTGCAT 50758 Query 162220 GGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTA 162279 || || || | || || | | |||||| || || |||| |||||||| || ||||| Sbjct 50759 GGTGGGTAGGGTGCACCTTTGGACACATCACCTTCAAAGTACTGCCACTTGACAAACCTG 50818 Query 162280 GTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAAC 162338 | | || | |||||| || || |||||| |||| || | || || || || || Sbjct 50819 GCCAGTGCGTTCATGTCAGAAACATCATACTTGC-CACTAGAAGAAACTGCACCTGGGAC 50877 Query 162339 ACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGA 162398 | || | |||||| | || |||||||| | || ||||| || || || || || | Sbjct 50878 TTCAGGGATTCTCTGAATTGTTGCCCACAGATACTCATCTGGGCTGTAAGTGTCTTTTGC 50937 Query 162399 CCACTCCATGAACTCCCTGACCGTTTTATCG---TATAGAATGTAAGAGACGTAGGACCT 162455 |||||| ||||||| | | |||| | | || | || || | ||| Sbjct 50938 CCACTCAATGAACT---TAAGTATTTTGCTGCTTTCTAATACATATTCTACAAATCTCCT 50994 Query 162456 GGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTT 162515 | | || | ||| || || ||||||||||| | || | | | ||| || | ||| Sbjct 50995 GCTAACTACAAAATAGGCACTACCAGAAAAAATTGGAGTACTGAGAGGTGGTAGTGGTTT 51054 Query 162516 GTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGT-GTCTCTTCCTCCACCTGG 162574 |||| || ||||| || | || || | | | | | || | || ||||||| Sbjct 51055 GTCTATGCCTGTGTTCTTTATTTTACCATCAATAATCTCATAGTGTTTTT-TCCACCTTA 51113 Query 162575 CCATCTTACTGGTAGACGGG----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCC 162630 | ||| || || || | ||| || || | ||||| ||| | ||| Sbjct 51114 CTTCTTTA----TAAACAGGCATTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGGGCT 51169 Query 162631 TTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTA 162690 || | | || || || | |||||||| | |||||||| |||| ||||| || Sbjct 51170 TTTAATTTCTCTACTATTTCCTGGTTGGTCTTTATAGGAAAGTCCATGCCACAGAGGTTT 51229 Query 162691 ATAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCC 162750 || | |||||||| || || || ||| ||||| | | ||||| | || ||| Sbjct 51230 ATTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCC 51289 Query 162751 TGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTG 162810 || || | ||||| || || || || || ||||| ||| ||| | ||||||||| Sbjct 51290 TGCACCCTGCTCCATGAAGCATATACAACACTCTCTAACTGGCTGGAAATAAAGACATTA 51349 Query 162811 TCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTA 162867 || ||||| || ||||| ||| |||| || || | || | || || ||||| | Sbjct 51350 TCAAAACATGAGACTATTCCCTTCACAGC-AGCAAAAAAAGATTCTGGAGA-CTTTC-TG 51406 Query 162868 TCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAAC 162927 || || || | |||||| | |||||||||||| ||||| | || || | ||| || | | Sbjct 51407 TCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGC 51466 Query 162928 ATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGA 162987 ||||| || || || | ||||| || || || || || || || || || || || Sbjct 51467 ATCTCAATTTTGTGATAAACCACTATTGAGTAAGCAATTGGAAATTCCGCTTCTTCATTG 51526 Query 162988 CTGAGAG 162994 ||||||| Sbjct 51527 CTGAGAG 51533 >seq45461 Length=939 Score = 96.9 bits (106), Expect = 4e-15 Identities = 250/376 (66%), Gaps = 4/376 (1%) Strand=Plus/Plus Query 162610 CTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGA 162669 ||||| || ||| || ||||||| ||| || ||||| |||||||| | ||| Sbjct 372 CTGTTCCGCCCCTGCAGCCCCTTCAGGGCACGGACGATCTCGGCGTTGGTCTTGATGGGG 431 Query 162670 AAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTA-CAGATC 162728 ||||||||||| ||| |||| | || | ||| | | | || | | ||| || Sbjct 432 AAGTCGGTGCCACAGGTGTTAAGGATGTAGTGCCATGGCATGGGGC-TCTGCAACAGGTC 490 Query 162729 CTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAA 162788 ||| | ||||| || || ||||| | || ||| || || || || || | |||| Sbjct 491 CTGCATGCAGTTGAGGTCAGCCTGCAGCCGGGACCAGGAGGCATAGACCACCTTTTCCAG 550 Query 162789 CCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAA 162848 | | || |||||||| ||| ||| || | || || || ||| ||| ||| Sbjct 551 GCGGCTAGCCACAAAGACGTTGGGGAAGCAGGCTACGATGGCCCGCACAGCCTCCTGGAA 610 Query 162849 CATCGGGTCCGCT-TTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGG 162907 ||| | | || ||||| | ||| || ||||| | ||||| ||||| |||| || Sbjct 611 GG-CGGCTGGGGACTTGCTATCAATGTGGACACAGTAGACGTTCTGGGGGGCATAGAGGG 669 Query 162908 CCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGG 162967 || ||| | || ||| |||||||| || || | ||| | || || || || || |||| Sbjct 670 ACCGCAGGAGTCGCTCAAACATCTCGATTTTGTTGTGGATGACCATGGAGTAGGCGATGG 729 Query 162968 GGAACTCAGCCTCCTC 162983 ||||||| |||||||| Sbjct 730 GGAACTCTGCCTCCTC 745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578045361590400