Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq21406 197 2e-44 seq6668 188 1e-41 seq39392 152 7e-31 seq13043 149 9e-30 seq38047 143 4e-28 seq11876 116 5e-20 seq10300 102 1e-15 seq5112 91.5 2e-12 >seq21406 Length=1681 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 468 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 521 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | |||||| ||| Sbjct 522 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 581 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| |||||||| Sbjct 582 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 641 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 642 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 690 >seq6668 Length=1120 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 436 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 383 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||| ||||| ||||||||||| |||| ||||||| | |||||| ||| Sbjct 382 AGCATCATGAATTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 323 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| |||||||| Sbjct 322 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 263 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | || |||||| ||||||| ||||||||||||||||||||||| Sbjct 262 CTGCTGCGGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 214 >seq39392 Length=3064 Score = 152 bits (168), Expect = 7e-31 Identities = 171/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||| || ||||||||||||||| |||| | | || ||| ||||| Sbjct 2768 TACAAGGTCCTGAAGCAGGTGCACCCCGACACCGGTATTTCTTCG------AAGGCCATG 2715 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||| || || |||||||| || |||| ||||||| | |||||| ||| Sbjct 2714 GGCATCATGAATTCCTTCGTCAACGATATCTTCGAGCGCATCGCCGGCGAGGCGTCCCGC 2655 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | |||| ||||||||||| || || || Sbjct 2654 CTGGCCCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCTGTCCGG 2595 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| |||||||||||||||||| |||| Sbjct 2594 CTCCTGTTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGGACCA 2546 >seq13043 Length=27760 Score = 149 bits (164), Expect = 9e-30 Identities = 181/244 (74%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||||| |||||||| |||||| || ||| |||| Sbjct 12571 TACTCCATCTATGTCTACAAGGTGCTGAAGCAGGTCCACCCCGACAC---TGG--CATC- 12518 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| |||| ||||| ||||||||||| || ||||| ||||| | || ||||||| Sbjct 12517 TCCTCCAAGGCCATGGGCATCATGAACTCCTTCGTCAATGACATCTTTGAGCGCATCGCT 12458 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || ||| |||||||| | | |||||||||| ||| ||| | | || ||||| Sbjct 12457 GGAGAAGCCTCCCGCCTGGCCCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATT 12398 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| |||||||||||| | | | || || ||||||| |||||| ||||| |||||| Sbjct 12397 CAGACAGCCGTGCGCCTGCTGCTCCCAGGAGAGCTGGCCAAGCACGCGGTCTCGGAGGGC 12338 Query 725139 ACCA 725142 |||| Sbjct 12337 ACCA 12334 >seq38047 Length=6184 Score = 143 bits (158), Expect = 4e-28 Identities = 168/229 (73%), Gaps = 11/229 (5%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 5414 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 5467 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | |||||| ||| Sbjct 5468 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 5527 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| ||| |||| | | ||||||||| | |||||||| Sbjct 5528 CTGGCGCACTCNNNNNNNNNNNNNNA---CGGC--GGGGGAGATCCAGCCGGCCGTGCGG 5582 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 5583 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 5631 >seq11876 Length=5451 Score = 116 bits (128), Expect = 5e-20 Identities = 93/112 (83%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| || |||||||||| | | ||| |||| ||||||||||| |||||| Sbjct 692 CGCCTGGCGCACTACAACAAGCGCTCCCCCATCACGTCGCGGGAGATCCAGACGGCCGTG 633 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||| | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 632 CGGCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 581 >seq10300 Length=34438 Score = 102 bits (112), Expect = 1e-15 Identities = 161/229 (70%), Gaps = 9/229 (4%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 || |||||||| ||||||||||| ||| || || |||| || |||| ||||| Sbjct 936 TATAAGGTGCTGAAGCAGGTGCATCCCAAGACGGT-----CATC-TCGTCCAAGGCCATG 883 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||| |||||||||||||||||||| |||| || || | |||||| || Sbjct 882 GGCATCACGAACTCGTTTGTCAACGACACCTTCGAGCGTATTGCTGGTGAGGCCTCGTGC 823 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | ||||||| | || ||| | | ||||||||||| ||||||| Sbjct 822 CTGGCGCAC---AACAAGCACTCCATCATCATGTTGTGGGAGATCCAGACAGCCGTGCAG 766 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| || || ||||||| ||| || |||| |||||||||| Sbjct 765 CTCCTGCTGCCTGGAGAGCTGGCCAAGCATGCTCTCTCAGAGGGCACCA 717 >seq5112 Length=6004 Score = 91.5 bits (100), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 725068 CGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCG 725127 |||| || |||||||| |||||||| ||| | ||| |||||| ||||||| |||||||| Sbjct 5466 CGCGGGATATCCAGACGGCCGTGCGGCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCG 5407 Query 725128 TCTCCGAGGGCACCA 725142 ||||||||||||||| Sbjct 5406 TCTCCGAGGGCACCA 5392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7172653534414788