Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq17223 129 8e-25 seq7229 129 8e-25 seq15305 89.7 7e-13 >seq17223 Length=94229 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || || || || ||||||||||| || || | ||| | Sbjct 11068 CCTCATCTCTGCTAATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 11009 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || |||||||| || || ||||||||||||||||| ||||| ||||| | Sbjct 11008 TCAGCCAAAAAATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 10949 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | || ||| || Sbjct 10948 CAACCACTCGCTCACC 10933 Score = 91.5 bits (100), Expect = 2e-13 Identities = 84/105 (80%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 39988 AAATCTTTC-CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 ||| ||||| | ||| |||||||| || ||||||||||| || ||||||||||||| | Sbjct 6333 AAAGCTTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAA 6274 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGT 40091 |||| ||||| ||||||||||| | | |||| || ||||||| Sbjct 6273 CATGAGAGATAAAGTATTTTTCATCTGCTTTCAACTTGTTCCAGT 6229 Score = 89.7 bits (98), Expect = 7e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||||||| | |||||||| ||||||||||| ||||||||||||||||| ||||||||| Sbjct 8549 ATCCACTTCAGAGCCCAATCTGCTTTCTTCTTGACACAAGGCATTGTTTCAATAGCATTA 8490 Query 39854 AA 39855 || Sbjct 8489 AA 8488 >seq7229 Length=62315 Score = 129 bits (142), Expect = 8e-25 Identities = 103/124 (83%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| ||||||||||||||||||||||||| || | || | Sbjct 2448 CCTCATCTCTGCTGATGAGTTCATTAGAAAATGTGAGTCCAGGCATTAATCCTCTTTTCT 2389 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || | |||||||| |||||||||||||| ||||| ||||||||||| | Sbjct 2388 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 2329 Query 39759 CAAC 39762 | || Sbjct 2328 CTAC 2325 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 ||||| |||||||| | || |||||||| || || ||||| || ||||| || |||||| Sbjct 3738 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 3679 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAT 39418 |||| || || ||||||||||| ||||| ||||| ||| || ||| Sbjct 3678 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATTCTCTGCTTTGTAT 3631 >seq15305 Length=33806 Score = 89.7 bits (98), Expect = 7e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || | ||||| || ||||| || |||||||| || || || | ||| Sbjct 14293 TGAAATTCTCCCGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCAATGGAT 14234 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822 || ||||| |||| ||| |||||||| || ||||||||||| || Sbjct 14233 TCGTTATTGCCCAAAATCTGAGCAGTAGAAGCAGTTGGCATGGG 14190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686449652985360