Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7229 107 2e-18 seq26086 104 2e-17 seq17223 82.4 6e-11 >seq7229 Length=62315 Score = 107 bits (118), Expect = 2e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 |||||| |||||||| || | ||||||| || ||||| ||||| || || || ||| Sbjct 716 CGGTTTAGTCAAGAAGTACAGATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATCGCC 775 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || |||||||| ||||| ||||||||||||||||| || || || ||||| |||||| Sbjct 776 ATGGAAAATATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATTAAAGAT 832 >seq26086 Length=12707 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || ||||| || ||| ||||||||| ||| Sbjct 6051 TGATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTGT 6110 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| || || || || ||||||||||| || || || || || || | Sbjct 6111 CTTGCCAACTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 6170 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || |||||||| || || || Sbjct 6171 GCTATTCACTGCTCACATACATGATTGCCCATGTCAC 6207 >seq17223 Length=94229 Score = 82.4 bits (90), Expect = 6e-11 Identities = 100/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||| ||||| |||||||| ||||||| ||||||||||| ||||| | Sbjct 16152 AAAATCCTTTTGATTTCATGGAGAATATTTCTCTGGAAGGAAAAACAAACTTCTTTGAGA 16211 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 | || ||| ||| ||||| || | | || ||| ||||| ||||| || | Sbjct 16212 AGCGGGTTTCAGAGTATCAACGTTTTGCTGTTATGGCAGAAACAATGGACAACGTCTTCA 16271 Query 44610 CTACGGATGAAGATTT 44625 || ||||| |||||| Sbjct 16272 CTCTGGATGCAGATTT 16287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397196972211370