Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq45461 185 1e-41 seq39109 86.0 8e-12 >seq45461 Length=939 Score = 185 bits (204), Expect = 1e-41 Identities = 267/371 (72%), Gaps = 8/371 (2%) Strand=Plus/Minus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || |||||| ||| |||| ||||| |||||||||||||| || || |||||| |||| Sbjct 757 CCGCTGAGCGAGGAGGAGGCAGAGTTCCCCATCGCCTACTCCATGGTCATCCACAACAAA 698 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 ||||||||||| ||||| |||||| || || |||| ||||| |||||| ||||||| ||| Sbjct 697 ATCGAGATGTTTGAGCGACTCCTGCGGTCCCTCTATGCCCCCCAGAACGTCTACTGTGTC 638 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGG-GGC-GTCTCGGCCATCGCCAGGT 13848 ||| | || ||||||| | || ||| | || ||| || |||||||| | Sbjct 637 CACATTGATAGCAAGTCCCCAGCCGCCTTC--CAGGAGGCTGTGCGGGCCATCGTAGCCT 580 Query 13849 GCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC 13908 ||||||| ||||| |||| ||| ||| | | ||||| || | ||||||| | Sbjct 579 GCTTCCCCAACGTCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGTCCC 520 Query 13909 GCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTG--GACGCCTCCCCCGTCAAGTGGAG 13966 | ||||||| ||||||| ||||||| ||||||| | | ||| | || ||| Sbjct 519 GGCTGCAGGCTGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCCATGCCA--TGGCA 462 Query 13967 GTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCG 14026 ||| | || ||| || || | |||||||| ||||||||||| |||||||| || Sbjct 461 CTACATCCTTAACACCTGTGGCACCGACTTCCCCATCAAGACCAACGCCGAGATCGTCCG 402 Query 14027 GGCGCTGAAGG 14037 || ||||||| Sbjct 401 TGCCCTGAAGG 391 >seq39109 Length=14497 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967 ||| ||| ||| |||||| ||||||| |||||| ||||| |||| ||| | Sbjct 11596 CGCCTGCGGGCTGACCTCCACTGCATGAGAGACCTGCTGGCCTCAGCCGTGCCCTGGTGT 11537 Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027 |||||||||||| ||||| ||||||||| | |||||||||| |||||| || | | Sbjct 11536 TACCTGCTCAACACCTGCGGCCAGGACTTCCCCTTGAAGACCAACCGGGAGATTGTCCAG 11477 Query 14028 GCGCTGAAGGCCCTGGGCGGCAAGAAC 14054 ||||||| ||| | || |||||| Sbjct 11476 CTGCTGAAGAGCCTCAGAGGGAAGAAC 11450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658298882250240