Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq26086 114 1e-20 seq31651 96.9 3e-15 >seq26086 Length=12707 Score = 114 bits (126), Expect = 1e-20 Identities = 125/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 ||| || ||||| || || |||||||| ||||| || || |||||||| || || || || Sbjct 6214 TAGTCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGG 6155 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832 ||| || || ||||| || || |||||||| ||||| ||||| || | || || | Sbjct 6154 CACTCCTAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAG 6095 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | ||||||||||||||| | ||||| ||| Sbjct 6094 AACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAGA 6049 Score = 93.3 bits (102), Expect = 3e-14 Identities = 121/162 (75%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG-TGCTCGAA 30075 || |||||||||||||| || || || ||||||| || || || || ||| |||| ||| Sbjct 2024 AAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCTTCCTCTCTGGTGCT-GAA 1966 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || || || ||||| ||||| || || || | Sbjct 1965 ACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTCACACCTTTTGC 1906 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 ||||||||||||| |||||| || || || || || ||||| Sbjct 1905 AGAGAGCTCTTTGGCGTTTGTAGAACC-CT-ACAAAACACAG 1866 >seq31651 Length=31910 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| |||| || | ||||||| | | ||| | |||||| || || Sbjct 3653 TTGAGCTCCCTGCTGAGCACTATATTAATCCTGTCTTTTAAAGGACGATTCTTCTCAGGA 3594 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| |||||||||||| | ||||| |||||| Sbjct 3593 ATGGAGAACCACGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCT 3546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405898497603964