Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq7229 111 2e-19 seq15305 102 1e-16 >seq7229 Length=62315 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | ||| |||||||||||||| || ||||||| ||| | ||| || Sbjct 2446 TCATCTCTGCTGATGAGTTCATTAGAAAATGTGAGTCCAGGCATTAATCCTCTTTTCTTC 2387 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| |||| || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 2386 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGC 2328 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||||| ||| || || || | |||||| |||||||| || || |||||||| || || Sbjct 832 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 773 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 ||||| || || || ||||| | ||||||||||||||||| || Sbjct 772 GATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATCTGTACTTC 728 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||||||||| || || ||||| || ||||| || |||||| Sbjct 3738 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 3679 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAT 47944 |||| || || |||||||| || ||||| ||||| |||| || || || Sbjct 3678 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATTCTCTGCTTTGTATAT 3629 >seq15305 Length=33806 Score = 102 bits (112), Expect = 1e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 78002 AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATG 78061 |||||| ||||| ||||||||||| ||||| || |||| ||| || |||| || || || Sbjct 8818 AACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAAAAAAGGTCTCTGGCTCGCTG 8759 Query 78062 TTCTTCATTTCCTGTATTCTT-TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATG 78120 ||||| || || || ||||| |||||| || |||||||| | || || ||||||||| Sbjct 8758 CTCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATG 8700 Query 78121 GTTCTAGATATATTGCCATAACTCCAGGTC 78150 | || || || || || | | | || |||| Sbjct 8699 GCTCCAGGTAGATGGCAAAAGCCCCGGGTC 8670 Score = 102 bits (112), Expect = 1e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| || | ||||| || ||||| || |||||||| || || || | ||| Sbjct 14293 TGAAATTCTCCCGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCAATGGAT 14234 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGG 77230 || || || |||||||| ||||||||||||||||||||||| || Sbjct 14233 TCGTTATTGCCCAAAATCTGAGCAGTAGAAGCAGTTGGCATGGG 14190 Score = 100 bits (110), Expect = 4e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || |||| |||| ||| || ||||| ||||||||||| || || || || ||||| || | Sbjct 2728 CACCACTGAATACTTTCTTAGTTTCTTTGTGTAGATTGGACACTGCAATCCTTGCTGCCA 2669 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858 | ||||| || ||||| |||| || || || || || |||| || || | | ||| Sbjct 2668 GGATAGCGTAGTCAGGGTGTTTGGTGGTCAGGGTTGCAGCCGTTTCAGCAGCCAGAGTAT 2609 Query 78859 CTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGAT 78913 | | || | || ||||| ||| | || || || ||||| |||||||||| ||| Sbjct 2608 CCAGTTCCACTGTCGTGACACCACTGTACAGGCCCTGAATCACTTTCATGGTGAT 2554 Score = 93.3 bits (102), Expect = 6e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || ||||| || ||||| || || || ||||| || ||||| ||||||| || || ||| Sbjct 6545 GTGCCTGCGTTGAATAACGTGGGGGAGGCATGGGTGAACCACCTTTCAGACAGAAGGTTG 6486 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||||||| || | ||| ||||| || || || || || | ||| | ||||||| Sbjct 6485 TAAGTTTCAATTGCAGCTTCAATGTCATTTTTGTGGATCCCCACTGATACCCTCATCAAC 6426 Query 78519 ATATGCTGAGG 78529 ||||| ||||| Sbjct 6425 ATATGTTGAGG 6415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694204466007360