Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq10859 132 1e-25 >seq10859 Length=4031 Score = 132 bits (146), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| |||||||||||||| ||||||||||| |||| || || | ||||||| Sbjct 671 AGCACAAGATGCAGAGTAGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCT 612 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | || |||||||| || Sbjct 611 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 552 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || || | || || Sbjct 551 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCCAAGGTGATG 495 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 494 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 460 Score = 107 bits (118), Expect = 4e-18 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| | || || || || ||||||||||| |||| | || | ||||||| Sbjct 443 AGCACAAGATGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 384 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | || |||||||| || Sbjct 383 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 324 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || || || || || Sbjct 323 TGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATG 267 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 || ||||| || || |||||||| |||| |||||||||| Sbjct 266 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTTA 228 Score = 100 bits (110), Expect = 7e-16 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| | || || || || ||||||||||| |||| | || | ||||||| Sbjct 899 AGCACAAGATGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 840 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | || |||||||| || Sbjct 839 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 780 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||| || |||| | | |||| ||| ||| || || | || || Sbjct 779 TGGATCTTAGCTTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCCAAGGTGATG 723 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 722 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153030276265054