Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq30824 161 1e-34 seq41622 87.8 3e-12 >seq30824 Length=29720 Score = 161 bits (178), Expect = 1e-34 Identities = 181/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| ||| |||||||| || ||||| ||| ||| |||||||| ||||||||||| Sbjct 26339 ATGAGTCTAGTAGTCTGGAAGAGCTGCTCATCATCCCACTCTGGATGCTCTTGTTTCAGG 26398 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || || | |||||||||||| ||||| || || ||||||||||| | || || Sbjct 26399 ATGTCACAGACTCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCTGGG 26458 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| || || |||| || || |||| | ||| || ||| || || | ||||| Sbjct 26459 ACCAAACCGAATACCTCCTGCCCAACAGAAAACTGCAAGTGTTCAGGTACATGAGGAGGG 26518 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | | || ||| || |||| |||||||||||||| || ||||| ||| Sbjct 26519 TAGATCATCTCTGCTTGAGTGTCCTTCACCGTTGGGGGATACATTTCTCCATCAATTATC 26578 Query 9484 TG 9485 || Sbjct 26579 TG 26580 Score = 138 bits (152), Expect = 2e-27 Identities = 174/235 (74%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| | ||| ||||||||||| |||||||||||| | ||||| ||||| | || Sbjct 24427 AAGCCCACTTTTCCACCGAAGGTGCTAGGCTTCCAGTACTCTGGGGAACAGATAGCATTT 24486 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||| || ||||| || |||||||| || || | || | || | ||||| |||||| Sbjct 24487 CCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATTTCCACCATTGTTTCACCAAAGATG 24546 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCCACAGCCTCGACGTC 8541 || || || |||||||| | |||||| || | ||||||||||| || || | ||| Sbjct 24547 GCACCTGGTCGTGGCTTTTCTA-CAAGAAGGCCTGGGTACAGCTCCATCGCATCAATGTC 24605 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-TTTATTAAT 8595 ||| ||||| | ||||| || || || || ||||||||||| |||| ||| Sbjct 24606 TCCATAAAGCTCTTCCAGTTCAGCCGCCATTTCTTTTTCTCCTGTAATTATCAAT 24660 Score = 89.7 bits (98), Expect = 7e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||||| || || | || |||||||| || | ||||| || || | |||| ||| Sbjct 28240 ACCTTTAACACCCATTGGTGTTGGACAGTCAAGTCCTACCGGTGGAAGGCTTCTTGTGTA 28299 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 |||||| |||||||| |||||||||||||| ||| || || |||||| | || Sbjct 28300 ATAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTATAATCACTGTTGTAAGTTGG 28359 Query 10030 AGGGCTGTCAATCAAATCGGATCTACCTGAGCCAGCAAAAAATA 10073 |||||||||||||| | ||||| |||| || ||||| || Sbjct 28360 TGGGCTGTCAATCAAGTGTGATCTTGCTGAAAAAGAAAAAAGTA 28403 >seq41622 Length=5892 Score = 87.8 bits (96), Expect = 3e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432 ||||||| || || ||||| ||||||||| | |||||||||||| ||| | | || | Sbjct 5569 CTCCGCCAAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCC 5628 Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492 | || || || |||||||| || | ||| | ||||| || || || || | ||||| Sbjct 5629 CCTTCAGAGAAAACGGAGCTCCGATCTCCACCATGCTTTCCCCAAAAATACCATTGGGTT 5688 Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 | || || || | || || || | || | ||||| ||| || | |||||| || || Sbjct 5689 GAGGTTTCTCAAGCAGCAAACCCGGATAAAACTCCAGAGCATCAATGTCTCCATACAG 5746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716397621624960