Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cariama_20cristata_20[refseq_20GCF_5F000690535.1_202014-05-12] 53,474 sequences; 1,132,245,425 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq10859 141 2e-28 >seq10859 Length=4031 Score = 141 bits (156), Expect = 2e-28 Identities = 174/235 (74%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 || ||||||||| | || || ||||| || || || || || || ||||||||||||| Sbjct 224 AGATTAAAATGC---AGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGG 280 Query 177970 TGGAAAGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 | | ||| || |||||||| |||||||| || ||||| |||||||| ||||| || Sbjct 281 TTG--AGCCCAGTGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCAT 338 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || || ||||| | || ||||| || || || ||||| |||||||| | || || Sbjct 339 TCCCCCCGATCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCACCCT 398 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || ||| |||| || ||||| || |||||||||| || | || ||| Sbjct 399 GTCCGACTACAACATCCAGAAGGAATCCACCTTGCATCTTGTGCTGCGCCTGAGA 453 Score = 136 bits (150), Expect = 1e-26 Identities = 166/222 (75%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || ||||| || || |||||| | ||||| || || ||| Sbjct 463 CAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAGGTTGA--GCCCAGTG 520 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| |||||||| ||||| || || || || |||| Sbjct 521 ACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGC 580 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 | | || ||||| || || || ||||| |||||||| | || |||| |||| || ||| Sbjct 581 AGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCAC-CTTGTCCGACTACAAC 639 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||||||||| || | || ||| Sbjct 640 ATCCAGAAAGAGTCTACTCTGCATCTTGTGCTGCGCCTGAGA 681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202906480871956