Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq51949 122 6e-23 seq25895 89.7 4e-13 >seq51949 Length=29608 Score = 122 bits (134), Expect = 6e-23 Identities = 93/110 (85%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || ||| ||||||| || | |||||||||| |||||||||| || ||||||||||| Sbjct 26806 CTTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGG 26865 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| || ||||||||||| |||| | |||||||||| ||| Sbjct 26866 AATGGAGAACCAGGTTTTTTTACCCATTATCAATGCATTCTGTTTACCTG 26915 >seq25895 Length=23370 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/183 (72%), Gaps = 3/183 (2%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| || || |||||||| || ||||| || ||||| | ||| || | Sbjct 1938 CTTTGTATTCTGCTCCAAAGTGTCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCT 1879 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| ||||| | ||||| | || | |||||||| |||||||||| Sbjct 1878 CCTCTCTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAA 1819 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACA-AC 102211 | | ||| || ||| || ||||||||| | ||||| || || | ||| |||| || Sbjct 1818 TCTTCACACCTTTTGCGGACAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAGAC 1761 Query 102212 AGT 102214 ||| Sbjct 1760 AGT 1758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360792693316391