Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq60182 138 1e-27 seq17340 91.5 2e-13 >seq60182 Length=4891 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 |||||||||||||||||||| | |||||||||||| || || |||||| ||| ||| Sbjct 4595 GAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGGCAGACCGGGGACCAGATGATGTACTG 4654 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAA 83262 |||| | ||| |||| | ||||||| || ||||| |||||| ||||| Sbjct 4655 CGGGTTGGTCATCAGCGAGGAGGGGTCGTCGTGCGGGAAGGGCAGCGCCTCTTTCAGGAA 4714 Query 83263 GGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTT 83322 || |||||| || || || | ||||| ||||||||||||||||| | | || | Sbjct 4715 GGTGAAGAGGGGGTGCGCGTTCTTCCCGTTCACCTCGCACTTCTCGAACATGAGGAAATC 4774 Query 83323 CGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTC 83373 |||| | ||||||| || ||||| ||||||| ||| || ||| |||||| Sbjct 4775 GGGCTTGTAGCCGTTGCCGGGACGAACGTGCTCCAGCGAGAGCAGGATCTC 4825 >seq17340 Length=654 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 83456 TGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTC 83515 ||||||| ||| | ||| ||||| ||||| || ||| | |||||||||||||| |||||| Sbjct 626 TGCAGCTGGTTGAGCTGGGTGTAGTCCCGCACTGTGGTGCCTCAGAGGGACGCCACGTTC 567 Query 83516 TCGATGAGCAAGACCCGGCCCCGTAAGA 83543 |||||||| | || |||||||| |||| Sbjct 566 TCGATGAGGACCACGCGGCCCCGGAAGA 539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608004291155640