Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq5167 125 6e-24 seq46366 120 3e-22 >seq5167 Length=31550 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||||| ||||| ||||| || ||||| ||||| | |||||| | |||| Sbjct 532 AGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCT 473 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || |||||||| || ||| | |||||||||||| Sbjct 472 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 413 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | ||||||| |||||| || | ||| |||||| Sbjct 412 TGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACCTCAAGGGTGATGGTC 353 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 352 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 321 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||||| ||||| ||||| || ||||| ||||| | |||||| | | || Sbjct 304 AGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 245 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || |||||||| || ||| | |||||||||||| Sbjct 244 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 185 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| |||||| | | | || |||| |||||| || | ||| |||||| Sbjct 184 TGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 125 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| || ||||| Sbjct 124 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 93 >seq46366 Length=3433 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || | ||| | ||||| | ||||| ||||| ||||| || ||||| ||||| Sbjct 2908 GTTTCCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTC 2967 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | |||||| | | || |||| ||| ||||| ||| | || || |||||||| || Sbjct 2968 GGACAGGGTGCGCCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGG 3027 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | |||||||||||| |||||| || || | | | || |||| |||||| Sbjct 3028 AGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTC 3087 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| ||| ||||||||||| || | || || ||||| || ||||| Sbjct 3088 AACTTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 3138 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| ||||||||||| || ||||| ||||| | || ||| | | || Sbjct 3155 AGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGCCCATCT 3214 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||| || ||||| ||| | || || |||||||| || ||| | |||||||||||| Sbjct 3215 TCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 3274 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | || |||| |||||| ||||| || |||||| Sbjct 3275 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGAGTGATGGTC 3334 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 ||||| || | || || ||||| || |||||||| Sbjct 3335 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 3369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421723260837956