Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq68496 349 2e-91 seq57109 87.8 1e-12 >seq68496 Length=888 Score = 349 bits (386), Expect = 2e-91 Identities = 590/844 (70%), Gaps = 14/844 (2%) Strand=Plus/Plus Query 107628 TACCTCAACATAACCAGAGACTGTGAGCG-CTTCAAGG---CCCAAAGGAAGTTCATACA 107683 ||||| ||||| || | ||||| ||| |||||||| ||| || |||||| | Sbjct 45 TACCTGAACATGACGAAGGACTGC-AGCAACTTCAAGGAGACCC---GGCGGTTCATTGA 100 Query 107684 GTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGA 107743 ||| || ||||| | || ||| ||| |||||||| |||||||| ||||| |||| | Sbjct 101 GTTTCCGCTGAGCCAGGAGGAGGCAGAGTTCCCCATCGCCTACTCCATGGTCATCCACAA 160 Query 107744 GAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTG 107803 || || || | || || ||||| ||||| || | || |||| |||||| | ||||| Sbjct 161 CAAAATCGAGATGTTCGAGCGGCTCCTGCGGTCCCTCTACACCCCCCAGAACGTCTACTG 220 Query 107804 TGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTC 107863 |||||| | || |||||||| | || ||| | ||||| || |||||| | | Sbjct 221 CGTCCACATTGACAGCAAGTCCCCGGCCACCTTCCAGGAGGCTGTGCGGGCCATCGTAGC 280 Query 107864 CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTC 107923 ||||||||||||||||||| |||| ||| |||| |||||| |||||||||||||| Sbjct 281 CTGCTTCCCCAATGTCTTCGTGGCTAGTCGCTTGGAAGAGGTGGTCTATGCCTCCTGGTC 340 Query 107924 CAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAA 107983 | | |||| || ||||| ||||| ||| | ||| || | | |||| | ||||||||| Sbjct 341 CCGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGTTGCGGAGCCCCGTGCCATGGCG 400 Query 107984 GTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCT 108043 ||||| || || || ||||| || ||||||||||| |||||||| || ||||| |||| Sbjct 401 CTACTTCCTCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCTGAGATCGTCCG 460 Query 108044 GGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaa 108103 ||||| |||| | || |||| ||||||| |||||||| ||| || || | ||| Sbjct 461 TGCCCTGAAGACGCTGCAGGGGCAGAACAGCATGGAGTCAGAGAAGCCCTCGGCCCTCAA 520 Query 108104 aaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGA- 108162 | | |||||| | |||| | | || ||| | | | | ||| |||| | | Sbjct 521 GCAGCAGCGCTGGCAGTACCACCACGAAGTGGGGAAGATCATCT-CCCGGACAGCCACAG 579 Query 108163 TGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCT 108222 ||| || || || | || | |||||||||||||| || || || | |||| | Sbjct 580 AGAAACTGCCGCCACCCCACAACTATCCCATGTTCACAGGCAACGCGTACATCGTGGTCA 639 Query 108223 CTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGG 108282 | || ||||| || || || |||| || ||||| | | || | | || |||| Sbjct 640 CACGGGCCTTCGTGCAGCACATCTTTGAGAACCCCACGGCGCAGCAGTTCCTCGAGTGGG 699 Query 108283 TCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTCCGTG 108340 ||| |||||||| ||||| ||||| ||| ||||||||||||| | || ||| ||| | Sbjct 700 CCAAGGACACCTACAGCCCTGACGAGCACGTCTGGGCCACCCTCAACCGCATGC-CCG-G 757 Query 108341 GATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGC 108400 |||| ||| | | || | ||||| || |||| ||||||| ||| | | Sbjct 758 CGTGCCGGGCGCCATGCCCCAGAATGACAAGTTCCAGCTCTCGGACATGAACGCCCTGCC 817 Query 108401 CAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACC 108460 | | || |||||||||||||||| ||||| || ||||| ||| ||||| || | || Sbjct 818 CCGCCTGGTCAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGGCGCGCCCTACCCGCC 877 Query 108461 CTGC 108464 |||| Sbjct 878 CTGC 881 >seq57109 Length=76961 Score = 87.8 bits (96), Expect = 1e-12 Identities = 197/290 (68%), Gaps = 12/290 (4%) Strand=Plus/Plus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || ||||| || || || | ||||| || ||||| | Sbjct 11926 TTGAGTGGGCAAAAGACACTTACAGCCCAGATGAGTACTTGTGGGCAACAATTCAGAGAA 11985 Query 108334 CTCCGTGGATGCCTGGCT-CTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| || | || || | | ||| || || || ||||| | | || |||||| Sbjct 11986 -TCCCTGAAGTCCCGGGTGCAGTTTCTTCTAGTGAC---AAGTACGATGTTTCTGACATG 12041 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGA--GGGAGATGTCAGCATGGGGG 108447 | ||| | |||||| | ||||||||||||||| || | || ||||| | || | Sbjct 12042 AATGCGCTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACATGTC--GAAAGGTG 12099 Query 108448 CGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGG 108507 | || || |||| ||| |||| | ||| | | |||| ||| ||||| || | Sbjct 12100 CACCCTACCCACCATGCAGTGGAGTTCATGTTCGCTCTGTCTGTGTTTTTGGGGCAGGAG 12159 Query 108508 ACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||||| ||||||| || | ||||| ||| |||| || || ||||||||| Sbjct 12160 ACCTGAACTGGATGCTACGAAACCACCACTTCTTTGCTAATAAGTTTGAC 12209 Score = 86.0 bits (94), Expect = 4e-12 Identities = 227/343 (66%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || || ||||| ||| || || ||||| ||||| || ||||| || | || Sbjct 11337 CCTCTCAGCAATGAAGAAGCAGAATTTCCAATTGCTTACTCAATAGTGGTTTATCACAAA 11396 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| | || || || | | |||||||||||||| | ||||| | Sbjct 11397 ATTGAGATGCTTGATAGACTTCTAAGATCAATCTATGCCCCTCAGAATTTTTACTGCATT 11456 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || ||||| ||||| |||| | || || |||| || | || || Sbjct 11457 CATGTTGACAGAAAGTCTCCAGAATCTTTTTTTGCTGCTGTGAAGGGAATAGTCTCATGT 11516 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| || |||| |||| | || || ||||| || ||| ||| Sbjct 11517 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTTGTATATGCTTCATGGAGCAGG 11576 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| || ||| | ||||| ||| |||| | || |||| ||| | | ||||| | Sbjct 11577 GTGCAGGCAGACATTAACTGCATGAAAGA-TCTCTACAGA-AGAAGTTCAAACTGGAAAT 11634 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 || || | || || || | ||||| || ||||||||||| Sbjct 11635 ACCTAATAAACCTCTGTGGCATGGACTTTCCTATAAAGACCAA 11677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347826770817834