Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq46366 120 2e-22 seq5167 116 3e-21 seq74741 111 1e-19 >seq46366 Length=3433 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||| | | | ||||||||||| ||| ||||||||| ||||||||||| Sbjct 3139 GCCACCTCTGAGACGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 3198 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || |||||||| || || || || |||| || ||| || ||||| || Sbjct 3199 CAAGGTGCGCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGG 3258 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||||||| || || ||| || | | | | |||| | ||| || Sbjct 3259 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 3318 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||| || || |||||||| ||||| |||||||||||||| ||||| || Sbjct 3319 TTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 3369 Score = 113 bits (124), Expect = 4e-20 Identities = 151/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| ||||| ||| |||||||| |||||||||||| ||| ||| | || |||| Sbjct 2931 CAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCA 2990 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 || || || || || |||| || ||| || |||||||| | || ||||||||| | Sbjct 2991 ACTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGA 3050 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | ||| || |||| ||| || ||||||| Sbjct 3051 TCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGC 3110 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | ||||| |||||||||||||| |||||| Sbjct 3111 CTGTCAGGGTCTTCACAAAGATCTGCATG 3139 >seq5167 Length=31550 Score = 116 bits (128), Expect = 3e-21 Identities = 152/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| ||||| ||| |||||||| |||||||||||| ||| ||| |||| |||| Sbjct 528 CAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCA 469 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || ||||| || |||| || ||| || ||||| || | || ||||||||| | Sbjct 468 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGA 409 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | | || | ||| ||||| | ||| || ||||||| Sbjct 408 TCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACCTCAAGGGTGATGGTCTTGC 349 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | ||||| |||||||||||||| |||||| Sbjct 348 CAGTCAGGGTCTTCACAAAGATCTGCATG 320 Score = 107 bits (118), Expect = 2e-18 Identities = 150/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| ||||| ||| |||||||| |||||||||||| ||| ||| | || |||| Sbjct 300 CAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCA 241 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || ||||| || |||| || ||| || || || || | || ||||||||| | Sbjct 240 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGA 181 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || || || | | | | |||| | ||| ||||| | ||| || ||||||| Sbjct 180 TCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGC 121 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | ||||| |||||||||||||| |||||| Sbjct 120 CAGTCAGGGTCTTCACAAAGATCTGCATG 92 >seq74741 Length=209 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || ||||| ||||||||||| ||| ||| | || ||||| ||||||||||| || Sbjct 209 TCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGTTTTCCGGCAAAG 150 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||||| ||| ||||| ||||| | || |||||||| || ||| ||| || | Sbjct 149 ATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTC 90 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||||||||| | || || ||||| || ||||| |||||||| Sbjct 89 TCAATGGTGTCACTCGGCTCCACCTCGAGAGTGATGGTCTTACCAGTCAGGGTCTTCACG 30 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 29 AAGATCTGCAT 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394573763271961