Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq63031 123 3e-23 seq97605 114 2e-20 seq58336 84.2 3e-11 seq101001 82.4 1e-10 >seq63031 Length=34312 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || || || || ||||| ||||| ||||| | ||| | Sbjct 23671 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 23730 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | ||| || || || ||||||||||| ||||| ||||||||||||| Sbjct 23731 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 23790 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | |||||| || Sbjct 23791 CAACCACTCTCTCACC 23806 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 33969 TTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 34028 |||||||| || |||||||||||||||||||||||||||| ||||| ||||| ||| Sbjct 28431 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAACGCCAGAACATGAGAGATAAAGTAT 28490 Query 34029 TTTTCGTCTGGTGTTAGTTTATTCCA 34054 ||||| |||| | | || || ||||| Sbjct 28491 TTTTCATCTGCTTTCAGCTTGTTCCA 28516 >seq97605 Length=2552 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||||| || | |||||||||||| |||||||| ||||||| || | || | Sbjct 295 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 354 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| || || || || || || ||||||||||||||||| ||||| ||||| | Sbjct 355 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 414 Query 33724 C 33724 | Sbjct 415 C 415 >seq58336 Length=8361 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 188494 TTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTTCTTGC 188553 ||||||||||| | ||||| | ||||| || || | |||||||| || ||||||| Sbjct 5705 TTTCTATGATGTGTCCATCGTCTTGCAAGCCTTTATTCTTACTACTGCTGTATTTCTTGG 5764 Query 188554 TCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||||| ||| ||| | || ||||||||||| ||||| ||| ||| | |||| Sbjct 5765 ACTGACTGCATATACCTTGCAGTCAAAGAGAGACTTCAGCAAATTTGGAGCAGG 5818 >seq101001 Length=4186 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| |||||||| | || |||||||| || || || || || ||||| || || ||| Sbjct 3179 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 3238 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 |||| || || ||||||||||| ||||| ||||| Sbjct 3239 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 3273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628997727066480