Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq97605 102 7e-17 seq63031 102 7e-17 >seq97605 Length=2552 Score = 102 bits (112), Expect = 7e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || || ||||| ||||| || || || ||||| | |||| ||| || Sbjct 297 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 356 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||| || | ||||| || || ||||| || |||||||| ||||||||||| ||| Sbjct 357 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 416 Query 13295 A 13295 | Sbjct 417 A 417 >seq63031 Length=34312 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || || || || || || || || ||||| || || | || || Sbjct 23673 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 23732 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||||||||||||||| ||||||||||| || || ||||| ||||| ||||| || Sbjct 23733 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 23792 Query 13295 ATCAACCTTTCACC 13308 | || || ||||| Sbjct 23793 ACCACTCTCTCACC 23806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430435389191682