Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq62774 168 2e-36 seq74741 156 1e-32 seq46366 145 2e-29 seq63031 113 1e-19 seq97605 111 4e-19 >seq62774 Length=67649 Score = 168 bits (186), Expect = 2e-36 Identities = 135/163 (83%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||| ||||| | ||||| | ||||||||| Sbjct 27245 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 27304 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 27305 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 27364 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 27365 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 27407 >seq74741 Length=209 Score = 156 bits (172), Expect = 1e-32 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 |||||||| || || |||||||| || || | ||| ||||| || |||||||| ||||| Sbjct 209 TCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGTTTTCCGGCAAAG 150 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | |||||| || |||||||| || ||||| || || || |||||||| || ||||| Sbjct 149 ATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTC 90 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| || || || || ||||| || || || ||||||||||| || || || || Sbjct 89 TCAATGGTGTCACTCGGCTCCACCTCGAGAGTGATGGTCTTACCAGTCAGGGTCTTCACG 30 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 29 AAGATCTGCAT 19 >seq46366 Length=3433 Score = 145 bits (160), Expect = 2e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || | || | || || || ||||| || || |||||| Sbjct 3137 ATGCCACCTCTGAGACGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCA 3196 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | || ||||| ||||| || |||||||| || |||||||| ||||| || Sbjct 3197 GACAAGGTGCGCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGG 3256 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || ||||| || | ||| || || || || Sbjct 3257 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCA 3316 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || || || ||||| ||||| || || || ||||| ||||||||||| Sbjct 3317 ACTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 3369 >seq63031 Length=34312 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 23794 GTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 23735 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||| | |||||||| || ||| | || ||||| || Sbjct 23734 CTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAGAT 23675 Query 269258 GA 269259 || Sbjct 23674 GA 23673 >seq97605 Length=2552 Score = 111 bits (122), Expect = 4e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| || || ||||| || |||||||| || |||||||| Sbjct 430 GGAGAACGCGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 371 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| ||||||||||||| | ||||| ||| | ||||| ||||||||| | Sbjct 370 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAACGAACTC 311 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 310 ATCAGTAGAGATGA 297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149862081558828