Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cathartes_20aura_20[genbank_20GCA_5F000699945.1_202014-06-11] 104,141 sequences; 1,152,571,117 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq13386 167 3e-36 seq41007 109 8e-19 >seq13386 Length=23710 Score = 167 bits (184), Expect = 3e-36 Identities = 228/317 (72%), Gaps = 1/317 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| || || |||||| | ||||| || ||| | | ||| Sbjct 5232 GGAAAGCAGTGAAAGGACAGCCCTTCACGTTGTTGCAGACGAGCTTCTGTAAGGAGGCAG 5173 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| | ||| ||||||||||| || |||||||| | |||| Sbjct 5172 TATTGATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGCTTCCAGTACTCAGGGG 5113 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || |||| || ||||| || |||||||| || || | ||| | || Sbjct 5112 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAAAACGGTGCTCCGATCTCCACCATTG 5053 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | ||||| |||||||| || || |||||||| || | | || | ||||| ||||| Sbjct 5052 TTTCACCAAAGATGGCACCCGGTCGTGGCTTTTCTACGAGAAGGCCTGGGTACAGCTCCA 4993 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977 ||| || |||||||| ||||| | ||||| || || ||||| ||||||||||| Sbjct 4992 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 4933 Query 8978 TTATTAATAAAAATAAA 8994 ||||| || || | ||| Sbjct 4932 TTATTGATGAATAAAAA 4916 Score = 143 bits (158), Expect = 4e-29 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| ||| || || ||||| || || ||| ||| |||||||| || ||||||| Sbjct 3177 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 3118 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||||||||| ||||| || || ||||||||||| | || || Sbjct 3117 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTGGCGTACATCATCAAGCCTGGG 3058 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| || || |||| || ||||||| | ||| | ||| || || | ||||| Sbjct 3057 ACCAAACCGAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTACGTGAGGAGGG 2998 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || |||| || ||||||||||| |||||||| ||| Sbjct 2997 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCGTCAATCATC 2938 Query 9862 TG 9863 || Sbjct 2937 TG 2936 >seq41007 Length=24362 Score = 109 bits (120), Expect = 8e-19 Identities = 131/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 8763 CTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGC 8822 ||||||| ||||| |||||||||||||| | |||||||||||| ||| | | |||| Sbjct 10234 CTCCGCCAAAGGTACTGGGTTTCCAGTAGTCTGGGGAGCAGATGGGGTTTCCAAGAAGGC 10175 Query 8823 CTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8882 | || || ||||||||||| || | ||| | ||||| || || || || | ||||| Sbjct 10174 CCTTCAGCGAAAACGGAGCTCCGATCTCCACCATGCTTTCCCCAAAAATACCATTGGGTT 10115 Query 8883 GGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 |||| || || | || || || || ||||||| ||| || |||||||| || || Sbjct 10114 GGGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCAGAGCATCAATGTCTCCATACAG 10057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707602468985040